Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq86 118 2e-21 >seq86 Length=170212 Score = 118 bits (130), Expect = 2e-21 Identities = 334/513 (65%), Gaps = 0/513 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || || || |||| || | | ||||| || || | || ||||| | | Sbjct 126894 TTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGT 126835 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||||| || | | || ||| || ||||| || ||||| || ||||| || |||| || Sbjct 126834 CCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAA 126775 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 ||||| || | | ||||| || || ||||| || || |||||||| | Sbjct 126774 GAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAA 126715 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||| | ||||| || || || || || || | | |||| || || || || || || Sbjct 126714 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCCACC 126655 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||| || | || | ||| ||||| || | || | | ||| |||| || ||||| || Sbjct 126654 CTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGA 126595 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 ||| || || || |||| || || ||| |||||||| || || || Sbjct 126594 TGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAGACC 126535 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 || || || ||||| |||||||| | || ||| || | || || ||||||||||| Sbjct 126534 GATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCCCTC 126475 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 ||||| || ||| |||||| | || || || ||| | || | || ||| || Sbjct 126474 GATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACC 126415 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 || || || | || ||||| || || ||||| Sbjct 126414 GGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAA 126382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931209618560