Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq18 194 4e-44 seq81 172 1e-37 seq43 129 1e-24 seq46 114 3e-20 seq33 89.7 1e-12 >seq18 Length=383124 Score = 194 bits (214), Expect = 4e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||||| || |||| || | ||||| || || || |||||||| |||| Sbjct 57909 CCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAG 57850 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| | || || || |||||||||| ||| || |||||| ||| Sbjct 57849 AGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 57790 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| ||||||||| || ||| |||| || || ||||||| |||||| Sbjct 57789 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACT 57730 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| |||||||| ||||| ||||| |||||||| Sbjct 57729 TCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||||| || || || ||||||||||| | Sbjct 57682 ACCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 57623 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || || || | ||| || || ||| || Sbjct 57622 GAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGG 57563 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| ||||||||| |||||| | ||||| ||||| |||| || || Sbjct 57562 GATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAAC 57503 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| |||||||| || || | ||||||||||| |||||||| Sbjct 57502 CTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || || || || | || || || |||||||||||||| | Sbjct 57226 ACCACCGCGCAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 57167 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| | || || |||||||| ||||| || || ||||| || Sbjct 57166 AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGG 57107 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || |||||| || || | || || || ||||| | ||||| Sbjct 57106 AATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGAC 57047 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| ||||| ||||| || |||| Sbjct 57046 CTCGAGGGTGATGGTCTTGCCGGTCA 57021 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || ||||| | || || || || ||||||||||| Sbjct 57454 ACCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCT 57395 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||| || || || || || ||||| || || | ||| || || || || Sbjct 57394 CAAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGG 57335 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||||||||||||| || ||| | ||||||||||| || | ||| || Sbjct 57334 AATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCAC 57275 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | |||||| ||||| || ||||| Sbjct 57274 CTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 >seq81 Length=180685 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || || || | ||||| || || |||||||||||||| | Sbjct 25114 ACCACCACGGAGGCGAAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 25173 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| ||||||| || || |||||| || Sbjct 25174 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 25233 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || || | ||||| ||||| || || | Sbjct 25234 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCGATGGTGTCGCTAGACTCCA 25292 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 25293 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 25341 >seq43 Length=285406 Score = 129 bits (142), Expect = 1e-24 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || || ||||| ||| Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || ||||| ||| |||||||||||||| || ||||| ||| || || | || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGC-TTGACATTGTC 263494 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 263495 AATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 >seq46 Length=277877 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 230183 AAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGA 230242 || ||| |||||||| | || || | |||||| ||| | |||||||| || || Sbjct 256082 AATTGAGCAGGAGTTCCTCACTGAGGCCCTCCCTTGCGCCCTTCTTGGCATGAACGCCGA 256023 Query 230243 TCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGA 230302 |||||| ||| || ||||| ||||| || |||||| | | || || || || |||| Sbjct 256022 CCTCATGAAGCAGTACATCGAGTTCGTCGCCGATCGTCTCCTTGTCGCCCTCGGCAACGA 255963 Query 230303 GAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAA 230362 ||| | || | || | |||||||||| || |||||| |||||| ||| || || Sbjct 255962 GAAGATCTACAGGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAA 255903 Query 230363 AACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 || ||||||||||| |||||||| |||| || || | | | ||||| Sbjct 255902 GACCAACTTCTTCGAGAAGCGTGTTGGCGACTACCAGAAGGCTGGTGT 255855 >seq33 Length=329773 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| |||| ||| || | ||| || || |||||||| | ||| Sbjct 150093 GGGAAACCCTCGACCTGCTCGTTGTTAATGGCGCGCATAAGGGTGGACTTGCCGGAACCG 150034 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||| ||||||||||| || || | || ||||||| || |||| | ||| ||| Sbjct 150033 TTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTCAGACGAAGGTGGGTCTGGTTGAGA 149974 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAA 317177 |||||||| |||| || || |||||||| Sbjct 149973 AGAATCTTGGCACCGTAGGCAAGAGAGAA 149945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734398738132