Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq81 143 6e-29 seq18 136 1e-26 seq43 129 1e-24 seq86 86.0 2e-11 >seq81 Length=180685 Score = 143 bits (158), Expect = 6e-29 Identities = 147/191 (77%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || ||||| || || || |||||||| |||||||| ||| Sbjct 25338 CAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC--- 25282 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||| || ||||| || ||||| |||||||| || || ||||| || |||||| Sbjct 25281 GACACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 25222 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || ||||| | || || |||| || ||| Sbjct 25221 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 25162 Query 178101 GTCCAAAAAGA 178111 |||| || || Sbjct 25161 ATCCAGAAGGA 25151 >seq18 Length=383124 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||| || |||||||| || || ||| Sbjct 57458 CAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCCGAC 57517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||| |||||||| || || ||||| || || ||||| Sbjct 57518 ACCATCGACAACGTAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAGCAG 57577 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| |||||||| ||||| | || || |||| || ||| | Sbjct 57578 CGTCTCATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATT 57637 Query 178104 CAAAAAGA 178111 || || || Sbjct 57638 CAGAAGGA 57645 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || || || ||||| || || ||||| ||| Sbjct 57023 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGATACCATTGACAATGTCAAGCAA 57082 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || || || || |||||||| || | || || ||||| || Sbjct 57083 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGCAAG 57142 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || ||||| | || ||| |||| || ||| |||| || || || || || || Sbjct 57143 CAGTTGGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 57202 Query 178125 CTTGT 178129 ||||| Sbjct 57203 CTTGT 57207 >seq43 Length=285406 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || ||||| |||||||| || ||| ||||| || Sbjct 263554 TTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCCGACACGATT 263495 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| || |||||||||||||| || || ||||| || |||||||| || || Sbjct 263494 GACAATGTCAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAGCGCCTG 263435 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || || || || || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 263434 ATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 263376 >seq86 Length=170212 Score = 86.0 bits (94), Expect = 2e-11 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| |||||||| || |||||| |||||| ||||| ||||| || | ||| Sbjct 127047 GTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGT 126988 Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247 ||| || || | || ||| || ||| || | |||||||| ||| ||| | | Sbjct 126987 CTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGACGGTCTTGC-GAC 126929 Query 214248 TCTTCCCT-CGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306 ||| ||| | |||||||||||||| || |||| || || || |||||| || || Sbjct 126928 CCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGG 126869 Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366 |||| || || ||||| ||||| | ||| |||| || || || | | || | | Sbjct 126868 CAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCT 126809 Query 214367 TCATGAAAAGGTCGGAAGTCCAGA 214390 |||||||||| |||| |||||| Sbjct 126808 TCATGAAAAGATCGGGGATCCAGA 126785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725678635452