Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq244 113 1e-19 >seq244 Length=165466 Score = 113 bits (124), Expect = 1e-19 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATG 230472 |||||||| | | || || | ||||| ||| || | |||||||| || || ||| Sbjct 56222 AGGAGTTCTTGTCCGAGTCTTTGCCATG-CGCACTGCTCGGCATGAATGCCACCCTCATG 56164 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | |||||||| || || || |||||||| | | | || || || || | || | Sbjct 56163 TGCCAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTC 56104 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 |||||| ||| || ||||||| ||||||||| ||| || || || ||||||||| Sbjct 56103 TACAACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAAC 56044 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG--AAGCCCGAAGA 230648 |||||||| |||||||| ||||||| |||| | | ||||| ||| |||| | |||| Sbjct 56043 TTCTTCGAGAAGCGTGTTGGTGACTACCAGAAGGCCGGTGTTATGGCAAGCACTAAGA 55986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818239817750