Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq196 116 4e-21
>seq196
Length=468221
Score = 116 bits (128), Expect = 4e-21
Identities = 266/398 (67%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929
|||||||| ||| | | |||||| ||||| |||||||| || || ||||||
Sbjct 28812 ACGTAGAATTGGGCGAACATGTGGCAAGGCGGGAGGGCCATTTTCTTGAGATCGGCCGGG 28871
Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGG 145989
||||| || | ||||| || | || | | ||| || || | | | || |
Sbjct 28872 TTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGATTACT 28931
Query 145990 TCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACG-TACGCGGC 146048
|| ||| ||||| ||||| |||||| |||||||| | | | | || || || ||||
Sbjct 28932 TCGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTG-CGTCGTGGCCGCGGTATTCGGC 28990
Query 146049 CCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC 146108
||||| || | ||| ||||| || |||||||| || | ||| || || |||
Sbjct 28991 GCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGTGTGA 29050
Query 146109 CAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCT 146168
||||| | | | |||||||| |||||| |||||| ||||||||||||||| ||
Sbjct 29051 GAGCCCTACGCTGTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTTGATTCCGGC 29110
Query 146169 CGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGAC 146228
| |||||| || ||| |||| || ||| ||||||||||| || ||| ||
Sbjct 29111 GTCTGAGAGCGGTTTTGAGGTTGTGGTGCCTGCGATAAACCAGAGCAGTTCGCCGATTAC 29170
Query 146229 CCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266
| | ||| || | |||||| || || |||||||
Sbjct 29171 GGCGCGGAGGAACACACGCTTGGTTGTTAGGAGGGGGA 29208
Score = 109 bits (120), Expect = 6e-19
Identities = 126/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 145675 TGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATG 145734
|||| ||||||| || ||||||| |||||||||||||||||| |||| |||| ||
Sbjct 28557 TGGATTTTCAGGGCGTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCCATTGTGTGGGTG 28616
Query 145735 AAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTG 145794
||| ||| ||| || | || |||||||| ||||| ||| || | | |||| |
Sbjct 28617 AAGGTCCCCGGCGTAAGATCGCAGACGTGGGCGAGCATGTGGGTTAGTAAAGCGTAGGAG 28676
Query 145795 GCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAG 145844
|| ||||||||||| | || || |||||||| | ||||| ||||| ||
Sbjct 28677 GCGATGTTGAAGGGGATGCCGAGGCCCATGTCGCAGGAGCGTTGGTAGAG 28726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590073665217000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |