Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq196 116 4e-21 >seq196 Length=468221 Score = 116 bits (128), Expect = 4e-21 Identities = 266/398 (67%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 |||||||| ||| | | |||||| ||||| |||||||| || || |||||| Sbjct 28812 ACGTAGAATTGGGCGAACATGTGGCAAGGCGGGAGGGCCATTTTCTTGAGATCGGCCGGG 28871 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGG 145989 ||||| || | ||||| || | || | | ||| || || | | | || | Sbjct 28872 TTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGATTACT 28931 Query 145990 TCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACG-TACGCGGC 146048 || ||| ||||| ||||| |||||| |||||||| | | | | || || || |||| Sbjct 28932 TCGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTG-CGTCGTGGCCGCGGTATTCGGC 28990 Query 146049 CCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC 146108 ||||| || | ||| ||||| || |||||||| || | ||| || || ||| Sbjct 28991 GCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGTGTGA 29050 Query 146109 CAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCT 146168 ||||| | | | |||||||| |||||| |||||| ||||||||||||||| || Sbjct 29051 GAGCCCTACGCTGTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTTGATTCCGGC 29110 Query 146169 CGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGAC 146228 | |||||| || ||| |||| || ||| ||||||||||| || ||| || Sbjct 29111 GTCTGAGAGCGGTTTTGAGGTTGTGGTGCCTGCGATAAACCAGAGCAGTTCGCCGATTAC 29170 Query 146229 CCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 | | ||| || | |||||| || || ||||||| Sbjct 29171 GGCGCGGAGGAACACACGCTTGGTTGTTAGGAGGGGGA 29208 Score = 109 bits (120), Expect = 6e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 145675 TGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATG 145734 |||| ||||||| || ||||||| |||||||||||||||||| |||| |||| || Sbjct 28557 TGGATTTTCAGGGCGTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCCATTGTGTGGGTG 28616 Query 145735 AAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTG 145794 ||| ||| ||| || | || |||||||| ||||| ||| || | | |||| | Sbjct 28617 AAGGTCCCCGGCGTAAGATCGCAGACGTGGGCGAGCATGTGGGTTAGTAAAGCGTAGGAG 28676 Query 145795 GCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAG 145844 || ||||||||||| | || || |||||||| | ||||| ||||| || Sbjct 28677 GCGATGTTGAAGGGGATGCCGAGGCCCATGTCGCAGGAGCGTTGGTAGAG 28726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590073665217000