Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq151 87.8 2e-12 >seq9 Length=355999 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||| ||||||||||| ||||| ||||| | ||| ||| || | ||| Sbjct 44963 AGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCC 45022 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | | |||||| ||| || | || || ||||| Sbjct 45023 TCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCC 45082 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | ||| ||||| | ||| || | || |||||| Sbjct 45083 TGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTC 45142 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || ||||| || |||||||| Sbjct 45143 TTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||| ||||| || ||||| ||||| | | Sbjct 45176 CCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45235 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | |||||||| || || || || | || | || ||| ||||| || Sbjct 45236 AAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGA 45295 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| || ||| ||||| | | ||| |||||| || || | Sbjct 45296 ATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACT 45355 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||||||||| Sbjct 45356 TCGAGGGTGATGGTCTTGCCGGT 45378 >seq151 Length=370960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||| ||||||||||| ||||| ||||| | Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||| || ||| ||| Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||| |||||||| |||||| Sbjct 220993 ATGCCCTCCTTGTCTTGGATCTT 221015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257012829300