Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq244 201 1e-46 seq9 122 9e-23 seq382 116 4e-21 seq151 95.1 1e-14 >seq244 Length=165466 Score = 201 bits (222), Expect = 1e-46 Identities = 218/286 (76%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | |||||| | || || Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852 Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||||| || | | | ||||||| | ||| ||||| ||| |||||||| |||||| Sbjct 56851 TCCAAAGATCTCCA-CGACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTCATCTC 56793 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || ||||| |||||||| ||| ||||| |||||||||||| |||||||||| Sbjct 56792 CCACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCG 56733 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || || || || |||||||||| ||||||||||||||||||||| || Sbjct 56732 ATTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGAT 56673 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | ||| ||| ||||||||||| ||| Sbjct 56672 GGAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATAC 56627 Score = 140 bits (154), Expect = 3e-28 Identities = 307/455 (67%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || || |||||| | | | | || |||| ||| ||| | Sbjct 56510 AGAAGGCCGACTGGGCTCTTCGATGGATCACGGATAAGAACTCCACCTTTGGCACGCGTC 56451 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | | ||||| || ||||| ||||| ||||||| || || || |||| || | Sbjct 56450 TTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCT 56391 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||||||||| || || || ||| ||| ||||||||||| | | Sbjct 56390 GGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTG 56331 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||| |||| ||||||||||| | || || || | | ||| || | Sbjct 56330 ACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCGCGCCCAA 56271 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | || || ||| |||| || || ||| |||| |||||| ||| | Sbjct 56270 GCAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGT 56211 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 |||| | |||| |||| ||||| || | || ||| | | |||| || ||||| Sbjct 56210 CCGAGTCTTTGCC-ATGCGCACTGCTCGGCATGAA-TGCCACCCTCATGTGCCAGTACAT 56153 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||| || |||||| | ||||| | | || | | | |||| ||||||| | | Sbjct 56152 TGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTAC 56093 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 ||| || | ||||||||| | ||||||| ||| Sbjct 56092 CAATCCCTTTGACTTTATGGAGAACATCTCCCTGG 56058 >seq9 Length=355999 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 ||||| || ||||||||| | || ||||| || |||||| | | | | | ||| Sbjct 45661 ACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATGTAAAGTCC 45602 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||| | ||||| |||||||| ||| | ||||| || || | |||| ||| ||||| Sbjct 45601 AAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAG 45542 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| |||||||| ||||||||||||||||||||| |||| || ||| Sbjct 45541 CAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTACAT 45482 Query 40894 CTAGT 40898 || || Sbjct 45481 CTCGT 45477 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| |||| |||||| || | || | | | | | | ||| | Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||||| ||||| |||||||| || | ||||| || ||| | |||| ||| || || Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || ||||| || | |||||| | ||||||||||||||||||||| |||| || ||| Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199 Query 40894 CTAGT 40898 || || Sbjct 45198 CTTGT 45194 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| |||||||| | || ||||| | | Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || ||| |||| ||||||||||| ||||| |||| || Sbjct 45114 GATACCATCGACAACG-TAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCA 45056 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || ||||| || || | || || || |||||||| Sbjct 45055 GCAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAA 44996 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| | || ||||| | ||| |||| Sbjct 44995 CATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCG 44960 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| || || | | Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| || || | || || ||||| ||||| | ||||| Sbjct 44886 GACACCATCGACAACG-TCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA 44828 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| || || ||||| || || | || || ||| ||||||||| Sbjct 44827 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAA 44768 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || | ||| | || || | ||||| Sbjct 44767 CATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720 >seq382 Length=167612 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | |||||||| || ||||||| || || || ||||| || Sbjct 145347 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 145406 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| |||||||||||||||||||||| | || || ||||| ||| | Sbjct 145407 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTC 145466 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 145467 CGCCTGCGTGGTGG 145480 >seq151 Length=370960 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||| || || || || |||| ||| ||||| ||||| || Sbjct 221006 GACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 220947 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || |||||| ||||||||||||||| |||||| | || || || Sbjct 220946 GACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCA 220897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216462898000