Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq244 201 1e-46
seq9 122 9e-23
seq382 116 4e-21
seq151 95.1 1e-14
>seq244
Length=165466
Score = 201 bits (222), Expect = 1e-46
Identities = 218/286 (76%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| || || || |||||||| | |||||| | || ||
Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852
Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
||||| || | | | ||||||| | ||| ||||| ||| |||||||| ||||||
Sbjct 56851 TCCAAAGATCTCCA-CGACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTCATCTC 56793
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || ||||| |||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct 56792 CCACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCG 56733
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || || || || |||||||||| ||||||||||||||||||||| ||
Sbjct 56732 ATTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGAT 56673
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | ||| ||| ||||||||||| |||
Sbjct 56672 GGAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATAC 56627
Score = 140 bits (154), Expect = 3e-28
Identities = 307/455 (67%), Gaps = 4/455 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| || || |||||| | | | | || |||| ||| ||| |
Sbjct 56510 AGAAGGCCGACTGGGCTCTTCGATGGATCACGGATAAGAACTCCACCTTTGGCACGCGTC 56451
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| | ||||| || ||||| ||||| ||||||| || || || |||| || |
Sbjct 56450 TTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCT 56391
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| || ||||||||||| || || || ||| ||| ||||||||||| | |
Sbjct 56390 GGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTG 56331
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||| |||| ||||||||||| | || || || | | ||| || |
Sbjct 56330 ACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCGCGCCCAA 56271
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | || || ||| |||| || || ||| |||| |||||| ||| |
Sbjct 56270 GCAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGT 56211
Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
|||| | |||| |||| ||||| || | || ||| | | |||| || |||||
Sbjct 56210 CCGAGTCTTTGCC-ATGCGCACTGCTCGGCATGAA-TGCCACCCTCATGTGCCAGTACAT 56153
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||| || |||||| | ||||| | | || | | | |||| ||||||| | |
Sbjct 56152 TGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTAC 56093
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
||| || | ||||||||| | ||||||| |||
Sbjct 56092 CAATCCCTTTGACTTTATGGAGAACATCTCCCTGG 56058
>seq9
Length=355999
Score = 122 bits (134), Expect = 9e-23
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
||||| || ||||||||| | || ||||| || |||||| | | | | | |||
Sbjct 45661 ACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATGTAAAGTCC 45602
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
||||| | ||||| |||||||| ||| | ||||| || || | |||| ||| |||||
Sbjct 45601 AAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAG 45542
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| |||||||| ||||||||||||||||||||| |||| || |||
Sbjct 45541 CAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTACAT 45482
Query 40894 CTAGT 40898
|| ||
Sbjct 45481 CTCGT 45477
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| ||||||||| |||| |||||| || | || | | | | | | ||| |
Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
||||||| ||||| |||||||| || | ||||| || ||| | |||| ||| || ||
Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
|| ||||| || | |||||| | ||||||||||||||||||||| |||| || |||
Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199
Query 40894 CTAGT 40898
|| ||
Sbjct 45198 CTTGT 45194
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| |||||||| | || ||||| | |
Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | || ||| |||| ||||||||||| ||||| |||| ||
Sbjct 45114 GATACCATCGACAACG-TAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCA 45056
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || || || ||||| || || | || || || ||||||||
Sbjct 45055 GCAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAA 44996
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||| |||||| | || ||||| | ||| ||||
Sbjct 44995 CATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCG 44960
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| || ||||| |||| || || | |
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||| || || | || || ||||| ||||| | |||||
Sbjct 44886 GACACCATCGACAACG-TCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA 44828
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||| | ||| || || ||||| || || | || || ||| |||||||||
Sbjct 44827 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAA 44768
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || || || | ||| | || || | |||||
Sbjct 44767 CATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720
>seq382
Length=167612
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| | |||||||| || ||||||| || || || ||||| ||
Sbjct 145347 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 145406
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| |||||||||||||||||||||| | || || ||||| ||| |
Sbjct 145407 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTC 145466
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 145467 CGCCTGCGTGGTGG 145480
>seq151
Length=370960
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||| || || || || |||| ||| ||||| ||||| ||
Sbjct 221006 GACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 220947
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||| || |||||| ||||||||||||||| |||||| | || || ||
Sbjct 220946 GACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCA 220897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515216462898000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |