Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9 125 6e-24 seq151 98.7 9e-16 seq382 96.9 3e-15 >seq9 Length=355999 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || ||||| ||||| |||||||| || Sbjct 44946 TACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTG 45005 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| || |||||||||||| ||||| || |||| | |||||||||||| || | Sbjct 45006 ACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCG 45065 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| ||||| ||| ||| ||| || | |||| ||| |||| ||||| Sbjct 45066 GGATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGA 45125 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || ||||| || || || || || || || ||||| Sbjct 45126 CCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || || || || || |||||||| ||| | || || |||||| Sbjct 44737 CACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTC 44796 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | ||||||||||| || || || || || |||||||| ||| Sbjct 44797 AAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTG 44856 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | |||| |||||| | ||| ||||||| || | || || Sbjct 44857 GATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTT 44916 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || || ||||||||||| Sbjct 44917 GCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 100 bits (110), Expect = 2e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || |||||||| ||| || ||||| |||||| || || || ||| Sbjct 45206 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCCTCCAGTTGCTTACCA 45265 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||| || || ||||| |||||||||||||| ||||||| || Sbjct 45266 GCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTTTGACTTC 45325 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| ||| || | | ||||| |||| ||| | || |||||||||| Sbjct 45326 ACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTTGCCGGTCA 45380 >seq151 Length=370960 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| ||||| |||||||| ||| | || || |||||| Sbjct 220891 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 220950 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || || ||| |||| || ||||| ||||| || || ||||||||||||||| Sbjct 220951 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCT 221007 >seq382 Length=167612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||| ||| | ||||| ||||| ||||| Sbjct 145456 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGC 145397 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 |||||||| |||||||||||||||| || || || ||||||||||||||| Sbjct 145396 TTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 145346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828152894100