Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq9 125 6e-24
seq151 98.7 9e-16
seq382 96.9 3e-15
>seq9
Length=355999
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | || ||||||||| | || ||||| ||||| |||||||| ||
Sbjct 44946 TACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTG 45005
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| ||| || |||||||||||| ||||| || |||| | |||||||||||| || |
Sbjct 45006 ACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCG 45065
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || ||||| ||||| ||| ||| ||| || | |||| ||| |||| |||||
Sbjct 45066 GGATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGA 45125
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| | || | || ||||| || || || || || || || |||||
Sbjct 45126 CCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 118 bits (130), Expect = 9e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || || || || || |||||||| ||| | || || ||||||
Sbjct 44737 CACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTC 44796
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| | ||||||||||| || || || || || |||||||| |||
Sbjct 44797 AAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTG 44856
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || ||| || | |||| |||||| | ||| ||||||| || | || ||
Sbjct 44857 GATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTT 44916
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||||||| || || |||||||||||
Sbjct 44917 GCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 100 bits (110), Expect = 2e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| ||| || ||||| |||||| || || || |||
Sbjct 45206 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCCTCCAGTTGCTTACCA 45265
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | ||||| || || ||||| |||||||||||||| ||||||| ||
Sbjct 45266 GCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTTTGACTTC 45325
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716
|| | |||| ||| || | | ||||| |||| ||| | || ||||||||||
Sbjct 45326 ACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTTGCCGGTCA 45380
>seq151
Length=370960
Score = 98.7 bits (108), Expect = 9e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| ||||| |||||||| ||| | || || ||||||
Sbjct 220891 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 220950
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
||||| || || ||| |||| || ||||| ||||| || || |||||||||||||||
Sbjct 220951 AGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCT 221007
>seq382
Length=167612
Score = 96.9 bits (106), Expect = 3e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| |||||||| || || |||||||| ||| | ||||| ||||| |||||
Sbjct 145456 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGC 145397
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
|||||||| |||||||||||||||| || || || |||||||||||||||
Sbjct 145396 TTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 145346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433828152894100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |