Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq164 91.5 3e-13 >seq164 Length=316633 Score = 91.5 bits (100), Expect = 3e-13 Identities = 218/325 (67%), Gaps = 16/325 (5%) Strand=Plus/Minus Query 248824 TTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTG 248883 ||||| | |||||| || || || ||| || || |||| ||| |||||||| | | Sbjct 150687 TTCTTCGGTTTCAAGACCCTTGAACGATCATACCTGCTCAGAATCAATGGCAAGGTTGCT 150628 Query 248884 GAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAG 248943 ||||| ||| |||||| | ||||| || ||||| || |||||| || ||||| ||| Sbjct 150627 GAACGTCCTCAACACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAG 150568 Query 248944 AGCGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCG 249000 || | ||||||| || | | ||| | || || | ||||||||| | ||| Sbjct 150567 TCCGCGATCGAGACATATAACTACATGTCAAACAAATACT---TCACACATGCCTCGCCG 150511 Query 249001 ACGCTCTTCAACGCCGGTA--CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCA 249058 || ||||||||||| || | |||||| || || || ||| ||||| || | | || Sbjct 150510 ACCCTCTTCAACGCAGGCACCCCGTCACCA--CAAATGTCCTCTTGCTTCCTCATCGACA 150453 Query 249059 TGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTT 249115 | | || || | || || || |||||||| || | |||| || | ||||| Sbjct 150452 TCAAGGATGATAGCATTGAAGGTATCTATGACACCCTGA---AGACTTGTGCCATGATTT 150396 Query 249116 CTAAATTCGCGGGCGGAATCGGTCT 249140 | || || ||||| || ||||| Sbjct 150395 CCAAGACTGCTGGCGGTATTGGTCT 150371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073760553006400