Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 >seq9 Length=355999 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCG 45184 ||||||||||| || |||||| || ||||||||||| ||| | ||| ||| ||| Sbjct 44966 ACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCG 45025 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || |||||||| || ||||| ||||| || || || || | |||||| |||||| Sbjct 45026 ---AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCC 45082 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| || || | | | | ||| ||| ||||| | || || ||| Sbjct 45083 TGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTC 45142 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| || ||||||||||| Sbjct 45143 TTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || ||| | || |||||||| || || ||||| Sbjct 45212 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAG 45271 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 ||||| ||||||||||| ||||| | |||||||||||| ||||||| ||| || Sbjct 45272 ATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATTTTTGACTTCAC 45327 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| ||| |||| |||| || || || || || ||||| Sbjct 45495 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAG 45554 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||||||||| || || | |||||||||||| ||||| Sbjct 45555 ATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTT 45601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073153633925