Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq164 233 2e-56
seq244 116 3e-21
seq9 104 2e-17
>seq164
Length=316633
Score = 233 bits (258), Expect = 2e-56
Identities = 496/732 (68%), Gaps = 10/732 (1%)
Strand=Plus/Plus
Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCA 23309
|||| ||||| | | ||||| || |||| ||| |||||| ||||| || | ||
Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059
Query 23310 TCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369
| || || | ||| |||| || | || || || |||| || | || || |
Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGA 150119
Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429
||||||| |||||||||| ||||| || || ||||| || || || || || | |
Sbjct 150120 TCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTA 150179
Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489
||| | ||| | || ||||| || ||||| |||||||| || | ||| || || ||||
Sbjct 150180 GATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCG 150239
Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549
| | |||||| || |||||||||||||| || || ||||||||||| || | ||||| |
Sbjct 150240 GACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGG 150299
Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC-ACACTCGAACCTTTTGCTCGAACG 23608
| | |||||| ||||| | || | ||||| | | || || | || || |
Sbjct 150300 GGATGAGACCATTGGAGGTACC-ATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATA 150358
Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668
|| || | | ||| || || || | | || || ||||| || || |||||
Sbjct 150359 CGATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGG 150418
Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728
||||| ||||| || || ||||| || || ||| | ||| | ||| || || ||||||
Sbjct 150419 GTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATT 150478
Query 23729 TGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC 23788
|| | | || || | || ||| || ||||| ||| || || |||||| ||
Sbjct 150479 TGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTT 150538
Query 23789 GACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847
||||| ||| || || || ||||| |||| |||||||| || ||||| || || | ||
Sbjct 150539 GACATGTAG-TTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGC 150597
Query 23848 GACGCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAG 23904
|| ||||| | ||||| |||||| | || | ||| | ||| || ||| ||| |||
Sbjct 150598 TACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTT---GCCATTGATTCTGAGCAG 150654
Query 23905 ATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCAC 23964
||||| |||| | || || || || || | | |||||| || ||||| || | |||
Sbjct 150655 GTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTCATACAC 150714
Query 23965 TATGGCCGAATT 23976
|||||||| ||
Sbjct 150715 GATGGCCGAGTT 150726
Score = 161 bits (178), Expect = 9e-35
Identities = 370/541 (68%), Gaps = 21/541 (4%)
Strand=Plus/Plus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| ||||| || |||| ||| ||||| ||||| | ||||||| | || || || |
Sbjct 148844 TGGTTCGAAGGTAGTACAAGCCAGTCTTGAGACCAAGCTTCCACCCAGCGAAGTGCATGG 148903
Query 22203 ACGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATC 22260
| || ||| || |||| | ||| | ||||| | |||| || || ||||||
Sbjct 148904 ATGT-AATCTTACCCATGG-TAGGCTCCTTCATGTGGATGTTGAGTGATTGGGACTGATC 148961
Query 22261 GATAAACGCTCCTCGATCGGCGGCCATATTTATCAATG-TACGCATCGACATTTCCCATA 22319
||| || ||||||||||| || ||||| | | ||||| | | | || |||||||| |
Sbjct 148962 GATGAATGCTCCTCGATCAGCAGCCATTTGGA-CAATGGTTCTCTGTGAAATTTCCCAAA 149020
Query 22320 CGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCG 22378
|||||||||| || | |||| || || || | | || ||||||| | || |||
Sbjct 149021 CGGTCTTGTAGAGAGCCTTGATGTCATCAGGGAT-GTTGGGAATCCTCTGAATAGAACCG 149079
Query 22379 TTATTGTGTA-TGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATC 22437
|| || | |||| || || || | || ||||| ||| || | | ||
Sbjct 149080 CC-TTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCACAGACCCATATCTACAAGGTC 149138
Query 22438 TTTGACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495
|| | ||| ||| | || || ||||| ||||| |||| |||||| ||||| ||||
Sbjct 149139 CTTCAACAGCCATG--GATTTACAACTTGGAACTCACCGGCCAAGACACGGCGAGAGTAA 149196
Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555
||||| || || | || || || | || |||||||| || ||||||| ||| |||||
Sbjct 149197 ATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAAGCC 149256
Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615
|| ||||| || || | || |||||||||| || || |||| | ||| || |||
Sbjct 149257 GTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCCTTC 149316
Query 22616 A--GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA 22673
| | ||| ||||||||| ||||| | || || || || |||||| ||||||||||
Sbjct 149317 AATGAATC--CCAGTCCCAAAGATCAGTAGGGGTGACGTT---CCACATGTCGTATTGCA 149371
Query 22674 A 22674
|
Sbjct 149372 A 149372
>seq244
Length=165466
Score = 116 bits (128), Expect = 3e-21
Identities = 197/285 (69%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | |||||||| ||||| ||||| || || ||||| | || || | || ||
Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || ||||| ||| ||| | | | || || ||| | || ||
Sbjct 56851 TCCAAAGATCTCCACGACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTCATCTCC 56792
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 56791 CACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCGA 56732
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| ||||| | |||||| | ||||| ||||| ||||| | ||
Sbjct 56731 TTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGATG 56672
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851
|| ||| | || || || | ||| ||||| |||||||| || |||
Sbjct 56671 GAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATAC 56627
>seq9
Length=355999
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||| | ||
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| || || || ||||| || | || || |||||
Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||| | || || || | ||| || |||
Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || ||||| || ||||| |||| || | ||| | |||||
Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764031866000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |