Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq164 233 2e-56 seq244 116 3e-21 seq9 104 2e-17 >seq164 Length=316633 Score = 233 bits (258), Expect = 2e-56 Identities = 496/732 (68%), Gaps = 10/732 (1%) Strand=Plus/Plus Query 23250 ACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCA 23309 |||| ||||| | | ||||| || |||| ||| |||||| ||||| || | || Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059 Query 23310 TCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 | || || | ||| |||| || | || || || |||| || | || || | Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGA 150119 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 ||||||| |||||||||| ||||| || || ||||| || || || || || | | Sbjct 150120 TCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTA 150179 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 ||| | ||| | || ||||| || ||||| |||||||| || | ||| || || |||| Sbjct 150180 GATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCG 150239 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | |||||| || |||||||||||||| || || ||||||||||| || | ||||| | Sbjct 150240 GACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGG 150299 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC-ACACTCGAACCTTTTGCTCGAACG 23608 | | |||||| ||||| | || | ||||| | | || || | || || | Sbjct 150300 GGATGAGACCATTGGAGGTACC-ATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATA 150358 Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668 || || | | ||| || || || | | || || ||||| || || ||||| Sbjct 150359 CGATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGG 150418 Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728 ||||| ||||| || || ||||| || || ||| | ||| | ||| || || |||||| Sbjct 150419 GTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATT 150478 Query 23729 TGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC 23788 || | | || || | || ||| || ||||| ||| || || |||||| || Sbjct 150479 TGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTT 150538 Query 23789 GACAT-TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGC 23847 ||||| ||| || || || ||||| |||| |||||||| || ||||| || || | || Sbjct 150539 GACATGTAG-TTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGC 150597 Query 23848 GACGCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAG 23904 || ||||| | ||||| |||||| | || | ||| | ||| || ||| ||| ||| Sbjct 150598 TACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTT---GCCATTGATTCTGAGCAG 150654 Query 23905 ATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCAC 23964 ||||| |||| | || || || || || | | |||||| || ||||| || | ||| Sbjct 150655 GTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTCATACAC 150714 Query 23965 TATGGCCGAATT 23976 |||||||| || Sbjct 150715 GATGGCCGAGTT 150726 Score = 161 bits (178), Expect = 9e-35 Identities = 370/541 (68%), Gaps = 21/541 (4%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| ||||| || |||| ||| ||||| ||||| | ||||||| | || || || | Sbjct 148844 TGGTTCGAAGGTAGTACAAGCCAGTCTTGAGACCAAGCTTCCACCCAGCGAAGTGCATGG 148903 Query 22203 ACGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATC 22260 | || ||| || |||| | ||| | ||||| | |||| || || |||||| Sbjct 148904 ATGT-AATCTTACCCATGG-TAGGCTCCTTCATGTGGATGTTGAGTGATTGGGACTGATC 148961 Query 22261 GATAAACGCTCCTCGATCGGCGGCCATATTTATCAATG-TACGCATCGACATTTCCCATA 22319 ||| || ||||||||||| || ||||| | | ||||| | | | || |||||||| | Sbjct 148962 GATGAATGCTCCTCGATCAGCAGCCATTTGGA-CAATGGTTCTCTGTGAAATTTCCCAAA 149020 Query 22320 CGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCG 22378 |||||||||| || | |||| || || || | | || ||||||| | || ||| Sbjct 149021 CGGTCTTGTAGAGAGCCTTGATGTCATCAGGGAT-GTTGGGAATCCTCTGAATAGAACCG 149079 Query 22379 TTATTGTGTA-TGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATC 22437 || || | |||| || || || | || ||||| ||| || | | || Sbjct 149080 CC-TTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCACAGACCCATATCTACAAGGTC 149138 Query 22438 TTTGACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 || | ||| ||| | || || ||||| ||||| |||| |||||| ||||| |||| Sbjct 149139 CTTCAACAGCCATG--GATTTACAACTTGGAACTCACCGGCCAAGACACGGCGAGAGTAA 149196 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 ||||| || || | || || || | || |||||||| || ||||||| ||| ||||| Sbjct 149197 ATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAAGCC 149256 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615 || ||||| || || | || |||||||||| || || |||| | ||| || ||| Sbjct 149257 GTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCCTTC 149316 Query 22616 A--GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA 22673 | | ||| ||||||||| ||||| | || || || || |||||| |||||||||| Sbjct 149317 AATGAATC--CCAGTCCCAAAGATCAGTAGGGGTGACGTT---CCACATGTCGTATTGCA 149371 Query 22674 A 22674 | Sbjct 149372 A 149372 >seq244 Length=165466 Score = 116 bits (128), Expect = 3e-21 Identities = 197/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| ||||| || || ||||| | || || | || || Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| ||| ||| | | | || || ||| | || || Sbjct 56851 TCCAAAGATCTCCACGACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTCATCTCC 56792 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 56791 CACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCGA 56732 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||||| | |||||| | ||||| ||||| ||||| | || Sbjct 56731 TTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGATG 56672 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 || ||| | || || || | ||| ||||| |||||||| || ||| Sbjct 56671 GAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATAC 56627 >seq9 Length=355999 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||| | || Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| || || || ||||| || | || || ||||| Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || || | ||| || ||| Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || ||||| |||| || | ||| | ||||| Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764031866000