Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq164 154 2e-32 seq244 93.3 5e-14 >seq164 Length=316633 Score = 154 bits (170), Expect = 2e-32 Identities = 482/738 (65%), Gaps = 14/738 (2%) Strand=Plus/Plus Query 63351 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63410 ||||| ||||| | | || || | ||||| || || | || ||||| | | || Sbjct 150179 AGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCC 150238 Query 63411 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 || || || || || |||||||| | ||||| || ||||| || || || | | ||| Sbjct 150239 GGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATG 150298 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 || || | ||| || || |||||||||| ||| |||||| ||| | || || ||| Sbjct 150299 GGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATA 150358 Query 63531 TTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63588 | | ||| | |||| || || || || | || || || | || || || | Sbjct 150359 CGATGCACATTCA--GACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCA 150416 Query 63589 ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63648 ||||||||||| ||||| ||||||||||| | |||| | || || || |||| Sbjct 150417 GGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACA 150476 Query 63649 TT--TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706 || |||||||| | || || || || || | ||| || || || || || || |||| Sbjct 150477 TTTGTGGTGACGGG--GTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTT 150534 Query 63707 TTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63765 | || | |||| || || ||||| || || || || || || ||||| |||| Sbjct 150535 GTTTGACATGTAG-TTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTA 150593 Query 63766 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACA 63825 | || |||||||| | |||||| ||||| | |||| ||| ||| || ||| | | || Sbjct 150594 CAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCA 150653 Query 63826 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63883 ||| ||| ||| | || || ||||| || | | || ||||| || || || || Sbjct 150654 GGTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATA 150711 Query 63884 AATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGA 63943 | || |||| || || | ||| | ||| | || ||||||||| | | || Sbjct 150712 CACGATGGCCGAGTTTAGATCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGA 150771 Query 63944 AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 64003 || || || ||||| || || || || ||||||||| | | |||| | || Sbjct 150772 TATCATAGGTTGGTGTTTGTGGTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAAC 150831 Query 64004 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAG 64063 | ||| | || || || | |||||||| || || | ||| || | ||||| || Sbjct 150832 AGCCGAGAATTGCTTCTTGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAG 150891 Query 64064 AATGGCATAATCCGGATG 64081 || ||||| || ||||| Sbjct 150892 TATAGCATAGTCAGGATG 150909 >seq244 Length=165466 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| ||||||||| | | || | || || || || ||||| || ||||| ||||| Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || ||||| || || | ||| |||||||| || || || || Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT-ATCCACTTTTGAGC 33772 |||||||| ||||| | | ||| | || | | | || || ||||| |||| Sbjct 56437 GGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGATCCATCGAAGAGC 56496 Query 33773 CCAATCGGCCTTCTT 33787 ||| ||||||||||| Sbjct 56497 CCAGTCGGCCTTCTT 56511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814254094000