Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq164 159 5e-34 seq244 86.0 8e-12 >seq164 Length=316633 Score = 159 bits (176), Expect = 5e-34 Identities = 467/711 (66%), Gaps = 14/711 (2%) Strand=Plus/Plus Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230 ||||| || || | || ||||| | | || || || || || || |||||||| | | Sbjct 150206 TGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACG 150265 Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290 |||| || ||||| || || || | | ||| || || | ||||||||| ||||||||| Sbjct 150266 TATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTG 150325 Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATA--TTACTAATTGATAGACCTATTCCCC 66348 || ||| |||||| ||| | || || ||| | | ||| ||||| || || | Sbjct 150326 GTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATT--CAGACCAATACCGC 150383 Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 66408 | || | || || || | || || || | || |||||||| || || || |||| Sbjct 150384 CAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTAT 150443 Query 66409 CATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAGTTCCCGCATT 66466 ||||| | |||| | || || || |||||| |||||||| || || || || Sbjct 150444 CATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACG--GGGTGCCTGCGTT 150501 Query 66467 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAA 66525 || | ||| || || || || || || |||| | || | |||| || || ||||| | Sbjct 150502 GAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTATATGTCTCGA 150560 Query 66526 TAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 66585 | || || || || || ||||| ||||| || |||||||| | |||||| |||| Sbjct 150561 TCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGTGTTGAG 150620 Query 66586 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 66645 | | |||| | | |||| || ||| | | || ||| ||| ||| | || || |||| Sbjct 150621 GACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCTTGAAAC 150680 Query 66646 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 | || | | || ||||| || || || || | || ||||||| || | ||| Sbjct 150681 CGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTAGATCATCTGC 150738 Query 66704 ATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 66763 | ||| | || | ||||||| | | || || || || ||||| || || Sbjct 150739 GTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTTTGTGGTTCTT 150798 Query 66764 AGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTT 66823 || |||||||||||| | | |||| | || | ||| | || || || | ||| Sbjct 150799 GGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCTTGGTCTGTTT 150858 Query 66824 GTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 |||||| || || ||||| || | ||||| | || ||||| || ||||| Sbjct 150859 GTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGATG 150909 >seq244 Length=165466 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| | ||||||||| | | || | || ||||| || ||||| || ||||| ||||| Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 |||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436 Query 36292 CGCAAAGGCAATAAG 36306 |||||||| ||||| Sbjct 56437 GGCAAAGGCGATAAG 56451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169303457000