Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq164 159 5e-34
seq244 86.0 8e-12
>seq164
Length=316633
Score = 159 bits (176), Expect = 5e-34
Identities = 467/711 (66%), Gaps = 14/711 (2%)
Strand=Plus/Plus
Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230
||||| || || | || ||||| | | || || || || || || |||||||| | |
Sbjct 150206 TGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACG 150265
Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290
|||| || ||||| || || || | | ||| || || | ||||||||| |||||||||
Sbjct 150266 TATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTG 150325
Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATA--TTACTAATTGATAGACCTATTCCCC 66348
|| ||| |||||| ||| | || || ||| | | ||| ||||| || || |
Sbjct 150326 GTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATT--CAGACCAATACCGC 150383
Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 66408
| || | || || || | || || || | || |||||||| || || || ||||
Sbjct 150384 CAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTAT 150443
Query 66409 CATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAGTTCCCGCATT 66466
||||| | |||| | || || || |||||| |||||||| || || || ||
Sbjct 150444 CATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACG--GGGTGCCTGCGTT 150501
Query 66467 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAA 66525
|| | ||| || || || || || || |||| | || | |||| || || ||||| |
Sbjct 150502 GAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTATATGTCTCGA 150560
Query 66526 TAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 66585
| || || || || || ||||| ||||| || |||||||| | |||||| ||||
Sbjct 150561 TCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGTGTTGAG 150620
Query 66586 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 66645
| | |||| | | |||| || ||| | | || ||| ||| ||| | || || ||||
Sbjct 150621 GACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCTTGAAAC 150680
Query 66646 CAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703
| || | | || ||||| || || || || | || ||||||| || | |||
Sbjct 150681 CGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTAGATCATCTGC 150738
Query 66704 ATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTT 66763
| ||| | || | ||||||| | | || || || || ||||| || ||
Sbjct 150739 GTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTTTGTGGTTCTT 150798
Query 66764 AGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTT 66823
|| |||||||||||| | | |||| | || | ||| | || || || | |||
Sbjct 150799 GGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCTTGGTCTGTTT 150858
Query 66824 GTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874
|||||| || || ||||| || | ||||| | || ||||| || |||||
Sbjct 150859 GTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGATG 150909
>seq244
Length=165466
Score = 86.0 bits (94), Expect = 8e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231
||| | ||||||||| | | || | || ||||| || ||||| || ||||| |||||
Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376
Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291
|||||| || ||||| || ||||| ||||| | || ||||| || || || || ||
Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436
Query 36292 CGCAAAGGCAATAAG 36306
|||||||| |||||
Sbjct 56437 GGCAAAGGCGATAAG 56451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658169303457000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |