Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq244 100 3e-16 >seq244 Length=165466 Score = 100 bits (110), Expect = 3e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 52824 AGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGT 52883 |||||| | | ||||||||| |||||| | ||||| || | || |||| || Sbjct 56254 AGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATG 56195 Query 52884 ATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAG 52943 || || | |||||||| || ||| | |||||| ||||||| ||||||||||| ||| | Sbjct 56194 CGCACTGCTCGGCATGAATGCCACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCG 56135 Query 52944 ACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTAT 53003 ||| | | ||||| | || | ||| || || || |||||| ||||| Sbjct 56134 TCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTACCAATCCCTTTGACTTTAT 56075 Query 53004 GAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | | ||||| || || | |||||| || ||||| ||||||| ||||| || || ||| Sbjct 56074 GGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTAC 56017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061364660000