Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq164 174 2e-38
seq244 107 3e-18
>seq164
Length=316633
Score = 174 bits (192), Expect = 2e-38
Identities = 586/901 (65%), Gaps = 16/901 (2%)
Strand=Plus/Plus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
|| ||||| || || |||| ||| | | |||||| ||||| || || | || | |
Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 79979
|| || || | || | || || ||||| || | || || ||||| || || || ||
Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039
|| || | | | ||| || || || ||| || | ||||| ||||| | |
Sbjct 150137 AAG-TCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAA 150195
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
|| || | ||||| || || | || ||||| | | ||||| || || || || ||
Sbjct 150196 AACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACC 150255
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
|||||| | ||||| || ||||| || || || | | ||| || || | |||||||||
Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315
Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGA 80217
||||||||||| ||| |||||| ||| | || || ||| | | ||| |||
Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATT--CAGA 150373
Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277
|| || || || || | || || || | || || || | || |||||||| ||
Sbjct 150374 CCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCT 150433
Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 80335
|| ||||||||||| | |||| | || || || |||||| |||||||| |
Sbjct 150434 TCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACG--GGG 150491
Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 80394
| || || || || | ||| || || || || || || |||| | |||| |||| ||
Sbjct 150492 TGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTA 150550
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| ||||| || || || || || || ||||| ||||| || |||||||| | |
Sbjct 150551 TATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGC 150610
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
||||| ||||| | |||| | | |||| ||| ||| | | || ||| ||| ||| |
Sbjct 150611 ATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGG 150670
Query 80515 GTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572
|| || ||||| || | | || ||||| || || || || | || ||||||| |
Sbjct 150671 GTCTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTA 150728
Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632
| | ||| | ||| | || | ||||||| | | || || || || ||||
Sbjct 150729 GATCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTT 150788
Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692
| || || || || ||||||||| | | |||| | || | ||| | || |
Sbjct 150789 TGTGGTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCT 150848
Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752
| || | |||||||| || || ||||| || | ||||| | || ||||| || ||||
Sbjct 150849 TGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGAT 150908
Query 80753 G 80753
|
Sbjct 150909 G 150909
Score = 104 bits (114), Expect = 3e-17
Identities = 368/567 (65%), Gaps = 11/567 (2%)
Strand=Plus/Plus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||||||||| || || || || | | || || || ||||||| || || || |||
Sbjct 148816 GTGAATTGAATTGGTGCAGACGCCGCCATGGTTCGAAGGTAGTACAAGCCAGTCTTGAGA 148875
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| || |||| || ||| ||||| || | || | || || ||
Sbjct 148876 CCAAGCTTCCACCCAGCGAAGTGCATGGATGTAATCTTACCCATGGTAGGCTCCTTCATG 148935
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
||||| || | ||||| ||||||||||| ||||| | || |||||||||| |
Sbjct 148936 TGGATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGACA 148995
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| || | |||| ||||||||||| || || || | ||| || || || || | |
Sbjct 148996 ATGGTTCTCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATG 149055
Query 78958 TTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | | || ||||| || || || ||||| || || | ||||| || | || |
Sbjct 149056 TTGGGAATCCTCTGAATAGAACCGCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGAC 149115
Query 79015 CATAATTTTCTCTCGGTTAAAACTC--TAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072
|| | | || | || || | | || ||||| || ||||| || || |
Sbjct 149116 CACAGACCCATATC--TACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACTCAC 149173
Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132
| | ||| || | |||| |||||| || ||||||||| || | | || || ||||
Sbjct 149174 CGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTC 149233
Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGA 79191
| | ||| |||| || || |||||||||||||| | || ||| | | | |||| | |
Sbjct 149234 CGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGG-GGCAACAAGGAGCGAGTTTCGCACA 149292
Query 79192 CCGT-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAAC 79250
|| | ||| | || || | || | || ||||| ||||||||||||| ||| ||
Sbjct 149293 CCATGCTGAGC-AATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAGTAGGGGTGAC 149351
Query 79251 ATTCCAAAGATCATATTGTAGAATACC 79277
||||| | || ||||| | |||||
Sbjct 149352 GTTCCACATGTCGTATTGCAAGATACC 149378
>seq244
Length=165466
Score = 107 bits (118), Expect = 3e-18
Identities = 142/195 (73%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||||| ||||||||| | | || || || ||||| || ||||| || ||||| |||||
Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
|||||| || ||||| || ||||| ||||| | || |||||||| || || || ||
Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT--GT-ATCCACTTTTGAGC 50150
||||||||| | ||| | | ||| | ||| | | | || || ||||| ||||
Sbjct 56437 GGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGATCCATCGAAGAGC 56496
Query 50151 CCAATCGGCCTTCTT 50165
||| |||||||||||
Sbjct 56497 CCAGTCGGCCTTCTT 56511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718264984197000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |