Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq164 174 2e-38 seq244 107 3e-18 >seq164 Length=316633 Score = 174 bits (192), Expect = 2e-38 Identities = 586/901 (65%), Gaps = 16/901 (2%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || ||||| || || |||| ||| | | |||||| ||||| || || | || | | Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 79979 || || || | || | || || ||||| || | || || ||||| || || || || Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || || | | | ||| || || || ||| || | ||||| ||||| | | Sbjct 150137 AAG-TCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAA 150195 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 || || | ||||| || || | || ||||| | | ||||| || || || || || Sbjct 150196 AACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACC 150255 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 |||||| | ||||| || ||||| || || || | | ||| || || | ||||||||| Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGA 80217 ||||||||||| ||| |||||| ||| | || || ||| | | ||| ||| Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATT--CAGA 150373 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || | || || || | || || || | || |||||||| || Sbjct 150374 CCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCT 150433 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 80335 || ||||||||||| | |||| | || || || |||||| |||||||| | Sbjct 150434 TCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACG--GGG 150491 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 80394 | || || || || | ||| || || || || || || |||| | |||| |||| || Sbjct 150492 TGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTA 150550 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||| || || || || || || ||||| ||||| || |||||||| | | Sbjct 150551 TATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGC 150610 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| ||||| | |||| | | |||| ||| ||| | | || ||| ||| ||| | Sbjct 150611 ATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGG 150670 Query 80515 GTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 || || ||||| || | | || ||||| || || || || | || ||||||| | Sbjct 150671 GTCTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTA 150728 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632 | | ||| | ||| | || | ||||||| | | || || || || |||| Sbjct 150729 GATCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTT 150788 Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 | || || || || ||||||||| | | |||| | || | ||| | || | Sbjct 150789 TGTGGTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCT 150848 Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 | || | |||||||| || || ||||| || | ||||| | || ||||| || |||| Sbjct 150849 TGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGAT 150908 Query 80753 G 80753 | Sbjct 150909 G 150909 Score = 104 bits (114), Expect = 3e-17 Identities = 368/567 (65%), Gaps = 11/567 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| || || || || | | || || || ||||||| || || || ||| Sbjct 148816 GTGAATTGAATTGGTGCAGACGCCGCCATGGTTCGAAGGTAGTACAAGCCAGTCTTGAGA 148875 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || || |||| || ||| ||||| || | || | || || || Sbjct 148876 CCAAGCTTCCACCCAGCGAAGTGCATGGATGTAATCTTACCCATGGTAGGCTCCTTCATG 148935 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| || | ||||| ||||||||||| ||||| | || |||||||||| | Sbjct 148936 TGGATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGACA 148995 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || | |||| ||||||||||| || || || | ||| || || || || | | Sbjct 148996 ATGGTTCTCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATG 149055 Query 78958 TTTGTATTC---TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || ||||| || || || ||||| || || | ||||| || | || | Sbjct 149056 TTGGGAATCCTCTGAATAGAACCGCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGAC 149115 Query 79015 CATAATTTTCTCTCGGTTAAAACTC--TAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 || | | || | || || | | || ||||| || ||||| || || | Sbjct 149116 CACAGACCCATATC--TACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACTCAC 149173 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 | | ||| || | |||| |||||| || ||||||||| || | | || || |||| Sbjct 149174 CGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTC 149233 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGA 79191 | | ||| |||| || || |||||||||||||| | || ||| | | | |||| | | Sbjct 149234 CGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGG-GGCAACAAGGAGCGAGTTTCGCACA 149292 Query 79192 CCGT-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAAC 79250 || | ||| | || || | || | || ||||| ||||||||||||| ||| || Sbjct 149293 CCATGCTGAGC-AATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAGTAGGGGTGAC 149351 Query 79251 ATTCCAAAGATCATATTGTAGAATACC 79277 ||||| | || ||||| | ||||| Sbjct 149352 GTTCCACATGTCGTATTGCAAGATACC 149378 >seq244 Length=165466 Score = 107 bits (118), Expect = 3e-18 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||||||||| | | || || || ||||| || ||||| || ||||| ||||| Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT--GT-ATCCACTTTTGAGC 50150 ||||||||| | ||| | | ||| | ||| | | | || || ||||| |||| Sbjct 56437 GGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGATCCATCGAAGAGC 56496 Query 50151 CCAATCGGCCTTCTT 50165 ||| ||||||||||| Sbjct 56497 CCAGTCGGCCTTCTT 56511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264984197000