Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq244 95.1 1e-14 seq9 82.4 8e-11 >seq244 Length=165466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 291/444 (66%), Gaps = 27/444 (6%) Strand=Plus/Minus Query 50425 GCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATT 50484 || |||||| ||||| ||| | || || |||| ||||||| |||| || | | Sbjct 56445 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCTGGCTC 56386 Query 50485 AA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGA 50543 || || | | ||| | ||||| || ||||| || ||| ||| | || || || ||||| Sbjct 56385 AAGAAGCGT-GGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTGACGA 56327 Query 50544 AGGAATGCACACAGACTTTGCGTGT------TTGTACTAC---AATACGCGCGTAAATGA 50594 || |||||||| |||||||| || || | | || || ||||| || | Sbjct 56326 GGGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCGCGCCCAA--GC 56269 Query 50595 AAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGA 50654 || || | ||| ||||| ||| || |||||| ||| || | || Sbjct 56268 AAG-----CAGGCTGTGCAA-----GACATCATCACTGAGGCCGTCACCATTGAGCAGGA 56219 Query 50655 GTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGA 50714 ||| || | || |||| || ||| || | |||||||| || | | |||||| | Sbjct 56218 GTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCA 56159 Query 50715 GTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGG--ACAACCGAAATACTAT 50772 |||||||||||||||||| ||| | || | || || || ||||| || | ||| Sbjct 56158 GTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAAC--AAGTTCTAC 56101 Query 50773 AATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTT 50832 || || || |||||| |||||| | ||||| || ||| |||||| || ||||| Sbjct 56100 AACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTC 56041 Query 50833 TTCGAAAGACGTGTAGGCGAATAC 50856 ||||| | ||||| || || ||| Sbjct 56040 TTCGAGAAGCGTGTTGGTGACTAC 56017 >seq9 Length=355999 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || |||||||| ||| | Sbjct 45176 CCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45235 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || ||||| |||||||| |||||| || || || || ||||| Sbjct 45236 AAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGA 45295 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| ||||||| || | | || | || || | || ||| ||| Sbjct 45296 ATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACT 45355 Query 143138 TCAACAGTCACCGTCTTGCCGGTCA 143162 || | || | ||||||||||||| Sbjct 45356 TCGAGGGTGATGGTCTTGCCGGTCA 45380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011706486000