Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq244 136 6e-27 seq164 107 3e-18 >seq244 Length=165466 Score = 136 bits (150), Expect = 6e-27 Identities = 292/427 (68%), Gaps = 17/427 (4%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || |||||||| ||||| |||||||| ||| ||||| ||||||| |||||| Sbjct 56445 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCTGGCTC 56386 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || |||||||| || || || | || ||| | || ||||| |||||| Sbjct 56385 AAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTGACGAG 56326 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACT-GTTTCGCAACT--ATCTGCGTCCCGAGTGC 125609 || | ||| |||||||||| || || |||| || || | ||| ||| | || Sbjct 56325 GGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCGCG-CCCAA--GC 56269 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 | | | || || || | ||||| | || || ||||| | || || || ||| Sbjct 56268 A-AGCAGGCTGTGCAA--GACATCA------TCACTGAGGCCGTCACCATTGAGCAGGAG 56218 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || | |||| || | || | ||| || | |||||||| || || |||||| | Sbjct 56217 TTCTTGTCCGAGTCTTTGCC-ATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCA 56159 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAA 125788 |||||| |||||||| || || ||||| || | | | | |||| | ||||| Sbjct 56158 GTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAA 56099 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 ||| | ||||||||||| || ||| | ||| || || | ||| ||||||||||| || Sbjct 56098 CGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTT 56039 Query 125849 CGAGAAG 125855 ||||||| Sbjct 56038 CGAGAAG 56032 >seq164 Length=316633 Score = 107 bits (118), Expect = 3e-18 Identities = 308/463 (67%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 96661 CCTCTTGCTATCTGCTCGAACTCAAAGAGGACAGCATCGGTGGCGT-TATGGACACGCTA 96719 ||||||||| || |||| |||| || || ||||| | || | |||| |||| || Sbjct 150473 CCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGGTATCTATG-ACACCCTG 150415 Query 96720 AAGGACGCG-GCCACCATTTCAAAACACTG-TGGCGGTGTAGGTTTGCATGTGCACAAGT 96777 ||| || | |||| ||||| || |||| ||||||| | ||| || ||||||| Sbjct 150414 AAG-ACTTGTGCCATGATTTCCAAG-ACTGCTGGCGGTATTGGTCTGAATGTGCATCGTA 150357 Query 96778 TGCGCTGTAAAAACTCTACGATTCATTCAACAAACGGCAACGCCAGTGGCCTAGTGCCAA 96837 | ||| || ||| ||| ||| || || | | ||| ||| || | || | Sbjct 150356 TCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCCCA 150297 Query 96838 TGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCA 96896 ||||| | | ||||| || || |||||||||| ||||| || ||||| || || Sbjct 150296 TGCTCCGCGTCTACAACAACACTG-CACGATACGTCGATCAGGGTGGGAATAAGCGTCCG 150238 Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956 || || | ||| |||| | || || |||||||| |||||||| | ||| | || | Sbjct 150237 GGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTTTCGGCTTCCTTGATCTA 150178 Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016 | ||||| ||| ||||||| || || | |||||||| || ||||| ||| | Sbjct 150177 AGGAAAAATCATGGTAAGGAAGAGGTCCGTGCTCGCGACTTGTTCTACGCACTATGGATC 150118 Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGAC 97076 || || |||||||||||||| ||| | || ||| | |||| || | |||||| || Sbjct 150117 CCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATGGACTCTGTTCTGCCCCAAC 150058 Query 97077 TCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119 | || || || |||| | || || |||||||||| Sbjct 150057 GAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGAGG 150015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055263123000