Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq244 136 6e-27
seq164 107 3e-18
>seq244
Length=165466
Score = 136 bits (150), Expect = 6e-27
Identities = 292/427 (68%), Gaps = 17/427 (4%)
Strand=Plus/Minus
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| || |||||||| ||||| |||||||| ||| ||||| ||||||| ||||||
Sbjct 56445 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATCTTCTGGCTC 56386
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552
|||||||| || |||||||| || || || | || ||| | || ||||| ||||||
Sbjct 56385 AAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCTCGTGACGAG 56326
Query 125553 GGCCTACACTGTGACTTTGCCATTCTACT-GTTTCGCAACT--ATCTGCGTCCCGAGTGC 125609
|| | ||| |||||||||| || || |||| || || | ||| ||| | ||
Sbjct 56325 GGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCACCTCAAGTCGCG-CCCAA--GC 56269
Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669
| | | || || || | ||||| | || || ||||| | || || || |||
Sbjct 56268 A-AGCAGGCTGTGCAA--GACATCA------TCACTGAGGCCGTCACCATTGAGCAGGAG 56218
Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGA 125728
|| | |||| || | || | ||| || | |||||||| || || |||||| |
Sbjct 56217 TTCTTGTCCGAGTCTTTGCC-ATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCA 56159
Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAA 125788
|||||| |||||||| || || ||||| || | | | | |||| | |||||
Sbjct 56158 GTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAA 56099
Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848
||| | ||||||||||| || ||| | ||| || || | ||| ||||||||||| ||
Sbjct 56098 CGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTT 56039
Query 125849 CGAGAAG 125855
|||||||
Sbjct 56038 CGAGAAG 56032
>seq164
Length=316633
Score = 107 bits (118), Expect = 3e-18
Identities = 308/463 (67%), Gaps = 8/463 (2%)
Strand=Plus/Minus
Query 96661 CCTCTTGCTATCTGCTCGAACTCAAAGAGGACAGCATCGGTGGCGT-TATGGACACGCTA 96719
||||||||| || |||| |||| || || ||||| | || | |||| |||| ||
Sbjct 150473 CCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGGTATCTATG-ACACCCTG 150415
Query 96720 AAGGACGCG-GCCACCATTTCAAAACACTG-TGGCGGTGTAGGTTTGCATGTGCACAAGT 96777
||| || | |||| ||||| || |||| ||||||| | ||| || |||||||
Sbjct 150414 AAG-ACTTGTGCCATGATTTCCAAG-ACTGCTGGCGGTATTGGTCTGAATGTGCATCGTA 150357
Query 96778 TGCGCTGTAAAAACTCTACGATTCATTCAACAAACGGCAACGCCAGTGGCCTAGTGCCAA 96837
| ||| || ||| ||| ||| || || | | ||| ||| || | || |
Sbjct 150356 TCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCCCA 150297
Query 96838 TGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCA 96896
||||| | | ||||| || || |||||||||| ||||| || ||||| || ||
Sbjct 150296 TGCTCCGCGTCTACAACAACACTG-CACGATACGTCGATCAGGGTGGGAATAAGCGTCCG 150238
Query 96897 GGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATG 96956
|| || | ||| |||| | || || |||||||| |||||||| | ||| | || |
Sbjct 150237 GGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTTTCGGCTTCCTTGATCTA 150178
Query 96957 CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTG 97016
| ||||| ||| ||||||| || || | |||||||| || ||||| ||| |
Sbjct 150177 AGGAAAAATCATGGTAAGGAAGAGGTCCGTGCTCGCGACTTGTTCTACGCACTATGGATC 150118
Query 97017 CCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGAC 97076
|| || |||||||||||||| ||| | || ||| | |||| || | |||||| ||
Sbjct 150117 CCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATGGACTCTGTTCTGCCCCAAC 150058
Query 97077 TCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGG 97119
| || || || |||| | || || ||||||||||
Sbjct 150057 GAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGAGG 150015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741055263123000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |