Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq196 82.4 5e-11 >seq196 Length=468221 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 25755 CCCCGAGTAGTCTGCCCTCATGTCCGTG-TACTCTGCTCCGAAATACCTCCACTGGAACC 25813 ||||| ||| ||||| || || ||| | || || || ||||||| | ||| ||||| | Sbjct 28955 CCCCGTGTAATCTGCG-TCGTGGCCGCGGTATTCGGCGCCGAAATGTCGCCATTGGAAGC 29013 Query 25814 CGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCT-TATCCAAAAAG 25872 | || || ||||||| ||| || ||||| ||| | | ||||| | | || | ||| Sbjct 29014 CATAGACGGGTCCTAAGTCGCCTTCTTCGTGGTG-TGAGAGCCCTACGCTGTCGAGGAAG 29072 Query 25873 TCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTT 25932 | ||| || ||| ||||||||||||| | || || |||||| ||| ||| || Sbjct 29073 GACCGGGAGCCGTTGCCGTCCCAGATCTTGATTCCGGCGTCTGAGAGCGGTTTTGAGGTT 29132 Query 25933 GTGGACCCTCTGACGAACCACAGCAGCTCCGCCG-TGACGGC 25973 |||| ||| || ||||| ||||| | ||||| | ||||| Sbjct 29133 GTGGTGCCTGCGATAAACCAGAGCAG-TTCGCCGATTACGGC 29173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340135838193525