Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq46 113 7e-21
seq381 109 9e-20
>seq46
Length=576294
Score = 113 bits (124), Expect = 7e-21
Identities = 87/101 (86%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| |||||| || |||||||| || ||||||||||| |||||
Sbjct 146563 GCCAAGCGTCACCGAAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 146621
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| ||||||
Sbjct 146622 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 146662
Score = 107 bits (118), Expect = 3e-19
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| ||||| ||| | |||| ||||||| ||| ||| |||| |||||
Sbjct 146719 TGATCTACGAAGAGACTCGTGGTGTCCTCAAGACCTTCCTCGAGAGCGTCATCCGTGATG 146778
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || |||||||| || || |||||||||||||| | || | ||||| |
Sbjct 146779 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCTCTCGACGTTGTCTACG 146838
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||||| | || ||||| || |||||
Sbjct 146839 CTCTTAAGCGACAGGGCCGTACCCTCTACGGTTTCGGTGGTTAA 146882
>seq381
Length=69827
Score = 109 bits (120), Expect = 9e-20
Identities = 85/99 (86%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| |||||| || |||||||| || ||||||||||| |||||
Sbjct 30360 GCCAAGCGTCACCGAAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 30302
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||| ||||| |||||||||||||| ||||||||| ||||
Sbjct 30301 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 30263
Score = 87.8 bits (96), Expect = 3e-13
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| ||| |||||| ||||||| || || || | ||| |
Sbjct 30208 TGATCTACGAGGAGACCCGTGGTGTCCTGAAGACCTTCCTCGAGGGTGTCATTCGTGACG 30149
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || || || |||||||| || || ||||||||||| ||| | || ||||||| |
Sbjct 30148 CTGTCACATACACTGAGCACGCCAAGCGCAAGACTGTCACATCCCTCGACGTCGTCTACG 30089
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || ||||| || | |||| ||||| || ||||
Sbjct 30088 CGCTCAAGCGACAAGGTCGCACCCTTTACGGTTTCGGTGGTTA 30046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074811419525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |