Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq164 158 2e-33 seq244 98.7 1e-15 >seq164 Length=316633 Score = 158 bits (174), Expect = 2e-33 Identities = 483/738 (65%), Gaps = 14/738 (2%) Strand=Plus/Plus Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359 ||||| ||||| | | || || | ||||| || || | || ||||| | | || Sbjct 150179 AGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCC 150238 Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 || || || || || |||||||| | ||||| || ||||| || || || | | ||| Sbjct 150239 GGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATG 150298 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479 || || | ||| || || |||||||||| ||| |||||| ||| | || || ||| Sbjct 150299 GGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATA 150358 Query 63480 TTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 | | ||| | |||| || || || || | || || || | || || || | Sbjct 150359 CGATGCACATTCA--GACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCA 150416 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597 |||||||||||||| || ||||||||||| | |||| | || || || |||| Sbjct 150417 GGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACA 150476 Query 63598 TT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655 || |||||||| || || || || || | ||| || || || || || || |||| Sbjct 150477 TTTGTGGTGACG--GGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTT 150534 Query 63656 TTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63714 | || | |||| || || ||||| || || || || || || ||||| |||| Sbjct 150535 GTTTGACATGTAG-TTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTA 150593 Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63774 | || |||||||| | |||||| ||||| | |||| | | |||| || ||| | | || Sbjct 150594 CAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCA 150653 Query 63775 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63832 ||| ||| ||| | || || ||||| || | | || ||||| || || || || Sbjct 150654 GGTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATA 150711 Query 63833 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGA 63892 | || ||||||| || | ||| | ||| | || ||||||||| | | || Sbjct 150712 CACGATGGCCGAGTTTAGATCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGA 150771 Query 63893 AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 63952 || || || ||||| || || || || ||||||||| | | |||| | || Sbjct 150772 TATCATAGGTTGGTGTTTGTGGTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAAC 150831 Query 63953 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 64012 | ||| | || || || | |||||||| || || ||||| || | ||||| || Sbjct 150832 AGCCGAGAATTGCTTCTTGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAG 150891 Query 64013 AATGGCATAATCCGGATG 64030 || ||||| || ||||| Sbjct 150892 TATAGCATAGTCAGGATG 150909 >seq244 Length=165466 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| ||||||||| | | || || || ||||| || ||||| || ||||| ||||| Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || ||||| || || | || |||||||| || || || || Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT-ATCCACTTTTGAGC 33494 |||||||| ||||| | | ||| | || | | | || || ||||| |||| Sbjct 56437 GGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGATCCATCGAAGAGC 56496 Query 33495 CCAATCGGCCTTCTT 33509 ||| ||||||||||| Sbjct 56497 CCAGTCGGCCTTCTT 56511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943890593000