Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq164 158 2e-33
seq244 98.7 1e-15
>seq164
Length=316633
Score = 158 bits (174), Expect = 2e-33
Identities = 483/738 (65%), Gaps = 14/738 (2%)
Strand=Plus/Plus
Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359
||||| ||||| | | || || | ||||| || || | || ||||| | | ||
Sbjct 150179 AGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCC 150238
Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419
|| || || || || |||||||| | ||||| || ||||| || || || | | |||
Sbjct 150239 GGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATG 150298
Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479
|| || | ||| || || |||||||||| ||| |||||| ||| | || || |||
Sbjct 150299 GGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATA 150358
Query 63480 TTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537
| | ||| | |||| || || || || | || || || | || || || |
Sbjct 150359 CGATGCACATTCA--GACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCA 150416
Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597
|||||||||||||| || ||||||||||| | |||| | || || || ||||
Sbjct 150417 GGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACA 150476
Query 63598 TT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655
|| |||||||| || || || || || | ||| || || || || || || ||||
Sbjct 150477 TTTGTGGTGACG--GGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTT 150534
Query 63656 TTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63714
| || | |||| || || ||||| || || || || || || ||||| ||||
Sbjct 150535 GTTTGACATGTAG-TTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTA 150593
Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63774
| || |||||||| | |||||| ||||| | |||| | | |||| || ||| | | ||
Sbjct 150594 CAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCA 150653
Query 63775 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63832
||| ||| ||| | || || ||||| || | | || ||||| || || || ||
Sbjct 150654 GGTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATA 150711
Query 63833 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGA 63892
| || ||||||| || | ||| | ||| | || ||||||||| | | ||
Sbjct 150712 CACGATGGCCGAGTTTAGATCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGA 150771
Query 63893 AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 63952
|| || || ||||| || || || || ||||||||| | | |||| | ||
Sbjct 150772 TATCATAGGTTGGTGTTTGTGGTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAAC 150831
Query 63953 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 64012
| ||| | || || || | |||||||| || || ||||| || | ||||| ||
Sbjct 150832 AGCCGAGAATTGCTTCTTGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAG 150891
Query 64013 AATGGCATAATCCGGATG 64030
|| ||||| || |||||
Sbjct 150892 TATAGCATAGTCAGGATG 150909
>seq244
Length=165466
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/195 (72%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377
||||| ||||||||| | | || || || ||||| || ||||| || ||||| |||||
Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376
Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437
|||||| || ||||| || ||||| || || | || |||||||| || || || ||
Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436
Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT-ATCCACTTTTGAGC 33494
|||||||| ||||| | | ||| | || | | | || || ||||| ||||
Sbjct 56437 GGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGATCCATCGAAGAGC 56496
Query 33495 CCAATCGGCCTTCTT 33509
||| |||||||||||
Sbjct 56497 CCAGTCGGCCTTCTT 56511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622943890593000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |