Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq164 325 1e-83 >seq164 Length=316633 Score = 325 bits (360), Expect = 1e-83 Identities = 1196/1857 (64%), Gaps = 91/1857 (5%) Strand=Plus/Minus Query 363373 GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTAT 363431 ||| || | ||| | | ||||| | ||||| | || ||| ||||| ||| | || Sbjct 150702 GATTTCAACTATCAGTTCTTCGGTTTCAAGACCCTTGAACGATCATACCTG-CTCAGAAT 150644 Query 363432 CAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCA 363491 |||||| | ||| |||||| || || || ||| | |||||||| ||| | || || || Sbjct 150643 CAATGGCAAGGTTGCTGAACGTCCTCAACACATGCTTATGCGTGTAGCTGTAGGCATTCA 150584 Query 363492 TTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTC 363549 || || |||| ||||||| || |||||||| || | | || | || ||| Sbjct 150583 CGGCGAAGACATTGAGTCCGCGATCGAGACATATAA-CTAC-ATGTCAAACAAATACTTC 150526 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTC-GTAATCCACAGATGTCTTCTTG 363608 || || ||| |||| || | | ||| || || || | || | ||||| ||||| ||||| Sbjct 150525 ACACATGCCTCGCCGACCCTCTTCAACGCAGGCACCCCGTCA-CCACAAATGTCCTCTTG 150467 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 ||| || | | || ||||| ||| ||| || ||||||| |||||| || |||| ||| Sbjct 150466 CTTCCTCATCGACATCAAGGATGATAGCATTGAAGGTATCTATGACACCCTGAAGACTTG 150407 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-AC 363727 ||| | |||||||||| ||| ||||| |||||| | | || | | || || || Sbjct 150406 TGCCATGATTTCCAAGACTGCTGGCGGTATTGGTCTGAATGTGCATCGTATCCGCGCTAC 150347 Query 363728 AGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTG 363787 | | || ||| |||| || || ||| ||||| || | |||||||| || | Sbjct 150346 TGG-CTCCTATATTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCCCATGCTCCGCG 150288 Query 363788 TGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTG 363847 | | |||| ||||| | |||||||| |||||||| ||||| || || || | Sbjct 150287 TCTACAACAACACTGCACGATACGTCGATCAGGGTGGGAATAAGCGTCCGGGTGCCTTCG 150228 Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-C 363906 | || ||||||||||| || ||||| |||| | || ||||| || ||||||| | Sbjct 150227 CCATCTATCTCGAGCCATGGCACGCCGACGTTTTCGGCTTCCTTGATCTAAGGAAAAATC 150168 Query 363907 ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 | || || |||||| | ||||| || || ||||||| ||||| ||| | | ||| Sbjct 150167 ATGGTAAGGAAGAGG---TCCGTGCTCGCGACTTGTTCTACGCACTATGGATCCCCGACT 150111 Query 363965 ATTTTATGAAGCGCGTG---GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 || |||||||| || ||| || |||| || | || || ||||| ||||| Sbjct 150110 TGTTCATGAAGCGTGTCCAAGAGAACGGC--GAAT-GGACTCTGTTCTGCCCCAACGAAG 150054 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT------ 364075 ||| || || |||| || | ||||| || | || | || ||| | |||| Sbjct 150053 CTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGAGGAACTCTACCACAAGTGAGTCA 149994 Query 364076 ------------------------ATGA-------------ATCGGAGGGA-AAGGCT-- 364095 |||| || ||| | ||||| Sbjct 149993 AACGAGTACAAACGTTTCACTCCAATGACTGACATTCCCAGATACGAGCGTGAAGGCCGT 149934 Query 364096 ---CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 ||| | ||| ||| || |||||||| |||| ||| ||| | || || |||| |||| Sbjct 149933 GGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATGCAATCCTAGAGTCCCAGACTGAG 149874 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || |||| || |||||| | ||||| ||| | |||||||||||| ||||||| || || Sbjct 149873 ACTGGAAACCCATATATGCTCTACAAGGATGCATGCAACCGCAAGAGCAACCAGAAGAAC 149814 Query 364213 CTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 | || || || | |||| | ||||| || || ||||| ||||| ||||||||||| || Sbjct 149813 TTGGGAACTATCC-GCAGTTCTAACCTCTGCACTGAGATCATTGAGTACACCGCTCCAGA 149755 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTAC 364331 ||| || ||||| ||| | | || | || || || || || || | || | Sbjct 149754 TGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTACCCGCTTTCGTCGACTATCATCG 149695 Query 364332 T------TTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCT-ACTTGCAATCT 364382 | | ||| |||| | || | || || || ||| |||| ||| |||| || Sbjct 149694 TGGCGAATATGATTTCCAGAAGCTCCACGAGGTCAC---TCAGGTGCTCACTCGCAACCT 149638 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCG 364442 |||| | ||||| ||| | || || | || || || ||| | | Sbjct 149637 AAACAAAATCATCGAAGTAAATCACTACCCCGTCGAAGAGGCACGCCGCAGCAATTTCAG 149578 Query 364443 TCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGAT 364502 || || || || || || ||||| || || |||||||| | || | ||| || Sbjct 149577 GCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCTGATGCATTCCTTGCCCTCCGCAT 149518 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 | | |||||||| || || ||| | || || | ||||||||||||| || || Sbjct 149517 GCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAACACTCAGATCTTTGAAACCATTTACCA 149458 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 ||| || | ||||| || || || | | || || || | || || || Sbjct 149457 TGCTGCCCTCACTGCATCCTGCGAGATTTCTAAGGAGCTTGGTCCTTATGCCACCTACGA 149398 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 || || || | || || || | || || | || | ||||| ||||| || ||| Sbjct 149397 AGGTTCTCCCGTGTCCCAAGGTATCTTGCAATACGACATGTGGAACGTCACCCCTACTGA 149338 Query 364683 CCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCT 364742 | ||| |||||||| | | ||||| || |||||||| || ||||| || Sbjct 149337 TCTTTGGGACTGGGATTCATTGAAGGCCAACATTGCTCAGCATGGTGTGCGAAACTCGCT 149278 Query 364743 CGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTT 364802 | || || || ||||| |||||||| || | ||||| |||||||||||||||||||| Sbjct 149277 CCTTGTTGCCCCTATGCCAACGGCTTCCACCTCTCAGATTCTCGGAAACAACGAGTGCTT 149218 Query 364803 CGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGT 364862 || || | ||| || |||| || ||||| || | |||| || || | || || Sbjct 149217 TGAGCCATATACCTCAAACATTTACTCTCGCCGTGTCTTGGCCGGTGAGTTCCAAGTTGT 149158 Query 364863 TAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAA 364922 ||| | || | ||||| ||| || || |||||| |||| ||||||||| Sbjct 149157 AAATCCATGGCTGTTGAAGGACCTTGTAGATATGGGTCTGTGGTCGGACAACATGAAGAA 149098 Query 364923 CTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAA 364982 | ||||| || | |||||| | |||| ||||| | || || || | || Sbjct 149097 CCGAATCATTGCAGAAGGCGGTTCTATTCAGAGGATTCCCAACATCCCTGATGACATCAA 149038 Query 364983 GCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTG---ATATGGCGGC 365039 | || | ||||| ||||| ||||||||||| | |||| ||||| | ||||| || Sbjct 149037 GGCTCTCTACAAGACCGTTTGGGAAATTTCACAGAGAAC---CATTGTCCAAATGGCTGC 148981 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAAC 365099 ||||| || || || ||| |||| ||| || | ||| | ||||| |||| || Sbjct 148980 TGATCGAGGAGCATTCATCGATCAGTCCCAATCACTCAACATCCACATGAAGGAGCCTAC 148921 Query 365100 CTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | ||| ||||||||||||| ||| |||||||| ||||| ||||| || Sbjct 148920 CATGGGTAAGATTACATCCATGCACTTCGCTGGGTGGAAGCTTGGTCTCAAGACTGG 148864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303346502832350