Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq382 98.7 9e-16 seq151 89.7 5e-13 seq164 84.2 2e-11 >seq9 Length=355999 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| || || | || ||||||||||| |||||||| || | Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| ||||||||||| ||||| ||| Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| | | || || | | || | ||||| | ||||||| Sbjct 45068 ATACCCTCTTTGTC-CTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGAC 45126 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| || ||||| Sbjct 45127 CTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||||| || || ||||| || |||||||| ||| | Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||||||||||||| |||| || ||||| ||||| || || Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||| | | || | || |||| |||||||| Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACT 45638 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || || || Sbjct 45639 TCCAAGGTGATGGTCTTTCCCGT 45661 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | ||| || ||||| || |||||||| ||| Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || | |||||| ||||| || ||| Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| ||| |||| | || | || || | ||||| | Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || ||||| || |||||||||||||| Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 >seq382 Length=167612 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 145480 CCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 145421 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | |||||||||||| || || Sbjct 145420 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGA 145361 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 145360 ATGCCCTCCTTGTC 145347 >seq151 Length=370960 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || || || | || ||||||||||| |||||||| ||| Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | ||||| || ||||| || Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 220993 ATGCCCTCCTTGTC 221006 >seq164 Length=316633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||| || || || ||||| |||||||| ||||| || | || | ||| || || | | Sbjct 149153 GATTTACAACTTGGAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATG 149212 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 | ||||| ||||||| || || || || |||| ||| | || || ||||| || | Sbjct 149213 GCTCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAA 149272 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || || |||| || |||| |||| |||| | | | |||| |||| Sbjct 149273 CAAGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCC 149332 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCC 145281 | || ||| || | |||| |||||||||||| ||||| || || Sbjct 149333 AAAGATCAGTAGGGGTGACGTTCCACATGTCGTATTGCAAGATACC 149378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010292432000