Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq164 170 2e-37
seq244 89.7 7e-13
>seq164
Length=316633
Score = 170 bits (188), Expect = 2e-37
Identities = 585/901 (65%), Gaps = 16/901 (2%)
Strand=Plus/Plus
Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052
|| ||||| || || |||| | | | || |||||| ||| | || || | || | |
Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076
Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63111
|| || |||| || | || || ||||| || | || || ||||| || || || ||
Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
|| || | | | || || || || ||| || | ||||| ||||| | |
Sbjct 150137 AAG-TCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAA 150195
Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231
|| || | ||||| || || | || ||||| | | || || || || || || ||
Sbjct 150196 AACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACC 150255
Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291
|||||| | ||||| || ||||| || || || | | ||| || || | |||||||||
Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315
Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGA 63349
||||||||||| || |||||| ||| | || || ||| | | ||| |||
Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATT--CAGA 150373
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409
|| || || || || | || || || | || || || | || |||||||| ||
Sbjct 150374 CCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCT 150433
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAG 63467
|| || ||||||||| | |||| | || || || |||||| |||||||| |
Sbjct 150434 TCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACG--GGG 150491
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTG 63526
| || || || || | ||| || || || || || || |||| | || | |||| ||
Sbjct 150492 TGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTA 150550
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586
|| ||||| || || || || || || ||||| ||||| || |||||||| | |
Sbjct 150551 TATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGC 150610
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646
||||| ||||| | |||| | | |||| || ||| | | || ||| ||| ||| |
Sbjct 150611 ATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGG 150670
Query 63647 GTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 63704
|| || ||||| || | | || ||||| || || || || | || ||||||| |
Sbjct 150671 GTCTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTA 150728
Query 63705 GTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTT 63764
| | ||| | ||| | || | ||||||| | | || || ||||| ||||
Sbjct 150729 GATCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTT 150788
Query 63765 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 63824
| || || || |||||||||||| | | |||| | || | ||| | || |
Sbjct 150789 TGTGGTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCT 150848
Query 63825 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 63884
| || | ||||||||| || || ||||| || | ||||| || || ||||| || ||||
Sbjct 150849 TGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGAT 150908
Query 63885 G 63885
|
Sbjct 150909 G 150909
>seq244
Length=165466
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/195 (71%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734
||| | ||||||||| | | || | || ||||| || ||||| || ||||| |||||
Sbjct 56317 GTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCC 56376
Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794
|||||| || ||||| || ||||| ||||| | || ||||| || || || || ||
Sbjct 56377 ACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 56436
Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT--GT-ATCCACTTTTGAGC 32851
|||||||| ||||| | | ||| | || | | | || || ||||| ||||
Sbjct 56437 GGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGATCCATCGAAGAGC 56496
Query 32852 CCAATCGGCCTTCTT 32866
||| |||||||||||
Sbjct 56497 CCAGTCGGCCTTCTT 56511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633628633830000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |