Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 107 2e-18
>seq9
Length=355999
Score = 107 bits (118), Expect = 2e-18
Identities = 140/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG- 25079
||||||| || ||||||| ||||||| || || ||||| || ||||| |||||
Sbjct 45380 TGACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGT 45321
Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139
|||||| ||| ||||| || || ||||| || ||||||||||| | || || || ||
Sbjct 45320 CAAAAATTCAG-GACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGT 45262
Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199
|| ||| | || |||| ||||| || ||| ||||| || || || |||||||| ||
Sbjct 45261 AAGCAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTT 45202
Query 25200 CATTTAGTGCT 25210
||| | || ||
Sbjct 45201 CATCTTGTCCT 45191
Score = 104 bits (114), Expect = 2e-17
Identities = 132/180 (73%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090
||||||| | ||||| ||||| || ||||| ||||| || || ||| ||||||
Sbjct 45651 CCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGA--CAATGTAAAGTCCAAAATCCA 45594
Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150
||||| || || ||||| || ||||||||||| | || || || ||||| || | ||
Sbjct 45593 GGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAGCAGCTCGA 45534
Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| | |||||| || ||| ||||| || || || |||||||| |||||| | || ||
Sbjct 45533 AGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTACATCTCGTCCT 45474
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| |||| || || | ||||| |||| || ||||| ||
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| |||| || | || | || || || || || || ||||||||
Sbjct 44886 GACACCATCGACAACGTCA---AATCGAAGATCCAA-GATAAGGAGGGTATCCCACCTGA 44831
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||||||| | ||||| || || || || | || |||| || || | ||| ||
Sbjct 44830 CCAACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTA 44771
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || ||||| || || || || |||||
Sbjct 44770 CAACATCCAGAAGGAATCAACCCTTCACTTGGTGCT 44735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433325755496375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |