Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 >seq9 Length=355999 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG- 25079 ||||||| || ||||||| ||||||| || || ||||| || ||||| ||||| Sbjct 45380 TGACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGT 45321 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 |||||| ||| ||||| || || ||||| || ||||||||||| | || || || || Sbjct 45320 CAAAAATTCAG-GACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGT 45262 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 || ||| | || |||| ||||| || ||| ||||| || || || |||||||| || Sbjct 45261 AAGCAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTT 45202 Query 25200 CATTTAGTGCT 25210 ||| | || || Sbjct 45201 CATCTTGTCCT 45191 Score = 104 bits (114), Expect = 2e-17 Identities = 132/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090 ||||||| | ||||| ||||| || ||||| ||||| || || ||| |||||| Sbjct 45651 CCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGA--CAATGTAAAGTCCAAAATCCA 45594 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 ||||| || || ||||| || ||||||||||| | || || || ||||| || | || Sbjct 45593 GGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAGCAGCTCGA 45534 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | |||||| || ||| ||||| || || || |||||||| |||||| | || || Sbjct 45533 AGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTACATCTCGTCCT 45474 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || | ||||| |||| || ||||| || Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| || | || | || || || || || || |||||||| Sbjct 44886 GACACCATCGACAACGTCA---AATCGAAGATCCAA-GATAAGGAGGGTATCCCACCTGA 44831 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | ||||| || || || || | || |||| || || | ||| || Sbjct 44830 CCAACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTA 44771 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || || || ||||| Sbjct 44770 CAACATCCAGAAGGAATCAACCCTTCACTTGGTGCT 44735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325755496375