Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq244 91.5 2e-13 >seq244 Length=165466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| |||||||| || || | ||| ||||| || || || | ||||||| ||| || | Sbjct 56302 GCAGGCAAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAG 56361 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 |||||| | || || || ||||||||||| || || || ||||| ||| || || Sbjct 56362 ACCTGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAA 56421 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || ||||| ||||| || | || ||| | |||| | | | ||| | Sbjct 56422 GATACCCTCAACGGCGGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGT 56481 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 ||||||| | |||||| ||||| || || Sbjct 56482 GATCCATCGAAGAGCCCAGTCGGCCTTCTT 56511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857841677000