Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 125 6e-24 seq151 104 2e-17 seq382 93.3 4e-14 seq164 91.5 1e-13 >seq9 Length=355999 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||| | || || || || ||||||| || || || | | Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || ||||| ||||||||||| ||||| || ||| Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||| || ||||||| |||||| Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | || || || | || |||| || || Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || ||||| ||| || | |||||| | ||| || | || | Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||||||||| ||||| || || ||||| || | || || || || || Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| ||||||| | ||||| |||||||| || || ||||||||| | ||| Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || | ||||| ||| Sbjct 45198 CTTGTCCTCCGTCTTCGCGGTGGT 45175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| | ||||| || || |||| ||| | ||| || | || Sbjct 45661 ACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATGTAAAGTCC 45602 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| || ||||||||||| ||||| || || ||||| || | || || || ||||| Sbjct 45601 AAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAG 45542 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || |||||| | ||||| |||||||| || || |||||||| ||||| Sbjct 45541 CAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTACAT 45482 >seq151 Length=370960 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 || ||| || |||| || || |||||||||||||| ||||| || |||||||| || Sbjct 221033 GTAGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGC 220974 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || || |||||||| ||| | ||||| ||| ||| ||||||| |||||||| ||| Sbjct 220973 CTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAA 220914 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || | || || || | || |||| || ||| Sbjct 220913 AAGGAGTCTACTCTCCACTTGGTCCTTCGTCTGCGTGGCGGT 220872 >seq382 Length=167612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || ||||| || || ||| | || Sbjct 145346 AGACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGA 145405 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 ||| ||||||| ||||||| |||||||| || || || || ||| | ||| | || | Sbjct 145406 GGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCT 145465 Query 22431 GCGATTGCGCGGAGGT 22446 || |||| || ||| Sbjct 145466 CCGCCTGCGTGGTGGT 145481 >seq164 Length=316633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 129127 TTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGC 129186 |||| ||||| || ||||| ||||| || || ||| ||||||||| ||| | ||| Sbjct 149155 TTTACAACTTGGAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATGGC 149214 Query 129187 TCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACG 129246 ||||| | || ||||| || | || |||| || | || || ||||| || || Sbjct 149215 TCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACA 149274 Query 129247 CAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCAC 129306 ||||||||||||| ||| ||||| ||||| || ||| ||||||||| Sbjct 149275 AGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAA 149334 Query 129307 ATCGAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350 | ||| || || ||| ||||||| |||||||||||| ||||| Sbjct 149335 A--GATCAGTAGGGGTGACGTTCCACATGTCGTATTGCAAGATACC 149378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725825940125