Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq9 125 6e-24
seq151 104 2e-17
seq382 93.3 4e-14
seq164 91.5 1e-13
>seq9
Length=355999
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| ||||| ||| | || || || || ||||||| || || || | |
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | ||||| || || ||||| ||||||||||| ||||| || |||
Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | |||||| ||| || ||||||| ||||||
Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || ||||| ||| | || || || | || |||| || ||
Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720
Score = 125 bits (138), Expect = 6e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || ||||| ||| || | |||||| | ||| || | || |
Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|||||||| ||||||||||| ||||| || || ||||| || | || || || || ||
Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | |||||| ||||||| | ||||| |||||||| || || ||||||||| | |||
Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || | || | ||||| |||
Sbjct 45198 CTTGTCCTCCGTCTTCGCGGTGGT 45175
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| | ||||| || || |||| ||| | ||| || | ||
Sbjct 45661 ACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATGTAAAGTCC 45602
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
||||| || ||||||||||| ||||| || || ||||| || | || || || |||||
Sbjct 45601 AAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAG 45542
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | || || |||||| | ||||| |||||||| || || |||||||| |||||
Sbjct 45541 CAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTACAT 45482
>seq151
Length=370960
Score = 104 bits (114), Expect = 2e-17
Identities = 120/162 (74%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344
|| ||| || |||| || || |||||||||||||| ||||| || |||||||| ||
Sbjct 221033 GTAGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGC 220974
Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404
|| || || |||||||| ||| | ||||| ||| ||| ||||||| |||||||| |||
Sbjct 220973 CTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAA 220914
Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || | || || || | || |||| || |||
Sbjct 220913 AAGGAGTCTACTCTCCACTTGGTCCTTCGTCTGCGTGGCGGT 220872
>seq382
Length=167612
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370
|||||||||||| ||||| || || || || ||||| || ||||| || || ||| | ||
Sbjct 145346 AGACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGA 145405
Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430
||| ||||||| ||||||| |||||||| || || || || ||| | ||| | || |
Sbjct 145406 GGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCT 145465
Query 22431 GCGATTGCGCGGAGGT 22446
|| |||| || |||
Sbjct 145466 CCGCCTGCGTGGTGGT 145481
>seq164
Length=316633
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 129127 TTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGC 129186
|||| ||||| || ||||| ||||| || || ||| ||||||||| ||| | |||
Sbjct 149155 TTTACAACTTGGAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATGGC 149214
Query 129187 TCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACG 129246
||||| | || ||||| || | || |||| || | || || ||||| || ||
Sbjct 149215 TCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACA 149274
Query 129247 CAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCAC 129306
||||||||||||| ||| ||||| ||||| || ||| |||||||||
Sbjct 149275 AGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAA 149334
Query 129307 ATCGAT--GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350
| ||| || || ||| ||||||| |||||||||||| |||||
Sbjct 149335 A--GATCAGTAGGGGTGACGTTCCACATGTCGTATTGCAAGATACC 149378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725825940125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |