Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq9 159 6e-34
seq151 122 2e-22
seq244 102 2e-16
seq210 86.0 1e-11
>seq9
Length=355999
Score = 159 bits (176), Expect = 6e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || || || || | |||||||| || || || || || |||||||| || |||||
Sbjct 44719 TCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 44778
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
||| || | ||||| || | |||||| || ||||| ||||| | |||||||| |||||
Sbjct 44779 GAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGG 44838
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|| || ||||| ||||| ||||| | |||||| ||||||||||||| || || ||
Sbjct 44839 GATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAAC 44898
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || || || || || ||||| ||||| ||||||||
Sbjct 44899 CTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 145 bits (160), Expect = 1e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||||| ||||| || || |||||||| || |||||
Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| || ||||| || | | |||||||| || |||
Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || || || | ||| || ||||||||||| | || || |||
Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACT 45638
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|||||||||||||| ||||||||
Sbjct 45639 TCCAAGGTGATGGTCTTTCCCGT 45661
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| || || ||||| ||||||||||| || || ||
Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || | | || || || || ||
Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || || ||||| |||||||||| || ||| |||||||| || | ||| || ||
Sbjct 45068 ATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACC 45127
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||| ||||||||||| || |||||
Sbjct 45128 TCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
>seq151
Length=370960
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| ||||||||||| || ||||||
Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | ||||| || || |||
Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386
||||| ||||||||||| ||||| | ||||||
Sbjct 220993 ATGCCCTCCTTGTCTTGGATCTTGGACTTGAC 221024
>seq244
Length=165466
Score = 102 bits (112), Expect = 2e-16
Identities = 271/411 (66%), Gaps = 20/411 (5%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||| || || ||||||||||| || || || |||||||||||||| ||||||| |
Sbjct 55999 CATAACACCGGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGC 56058
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
||||| ||| |||||| ||||||||||| || ||| | |||| || ||
Sbjct 56059 CAGGGAGATGTTCTCCATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCC 56118
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| ||| || | ||||| || || ||||| |||||||||| ||| ||| | ||
Sbjct 56119 GAGGGCTAAGAGCAGACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATT 56178
Query 10115 CATGCCAATCA-TGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173
|||||| | || ||| ||| || | | ||| | | ||| |||| || ||| ||| |
Sbjct 56179 CATGCCGAGCAGTGC-GCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGG 56237
Query 10174 CTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTT---------CTCGAGCT 10224
| || || |||| |||| ||| | | ||||| | || ||| |
Sbjct 56238 CCTCAGTGATGATG-TCTT--GCAC------AGCCTGCTTGCTTGGGCGCGACTTGAGGT 56288
Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284
||| | ||||| |||| | ||| | |||||||| || ||||| ||| |
Sbjct 56289 GGGAAAAGAGGAGGCAGGCAAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCAT 56348
Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG 10335
|||| || ||||| |||||||| || || || |||||||| ||||
Sbjct 56349 TGGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG 56399
>seq210
Length=320770
Score = 86.0 bits (94), Expect = 1e-11
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469
|||| ||| || || ||| | | ||| ||| |||||||||| || |||||||| |||
Sbjct 304457 TTCTGCTCATAGTGGTAAATGTCTGTGCAAACTTCGTCAAGGAAACCCGAGTCGTGAGAC 304516
Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTG 225529
||||| | | | | | || ||| ||| |||| | |||||| |||||
Sbjct 304517 ACAATCAAGCTAGTAATCTCAGTGTGGCTCTTCAGGTACTCTTGGAGCCACTTGACGTTC 304576
Query 225530 CTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATG 225589
|| |||| ||| || ||||||||||| || ||||||| || || || || |||
Sbjct 304577 GCAACATCCAAGTGATTGGTAGGTTCGTCAAGGAGCAGGACATCTGCTCGCATCAGCATG 304636
Query 225590 GCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACA 225629
|| | | | || |||||||| |||||||| |||||||
Sbjct 304637 GCCCTAGCCAAAGCTAGCTTCATCTTCCAGCCTCCGGACA 304676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921617503881000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |