Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 159 6e-34 seq151 122 2e-22 seq244 102 2e-16 seq210 86.0 1e-11 >seq9 Length=355999 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||||||| || || || || || |||||||| || ||||| Sbjct 44719 TCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 44778 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | ||||| || | |||||| || ||||| ||||| | |||||||| ||||| Sbjct 44779 GAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGG 44838 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||| ||||| ||||| | |||||| ||||||||||||| || || || Sbjct 44839 GATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAAC 44898 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || ||||| ||||| |||||||| Sbjct 44899 CTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||||| ||||| || || |||||||| || ||||| Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || | | |||||||| || ||| Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || || || | ||| || ||||||||||| | || || ||| Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACT 45638 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 |||||||||||||| |||||||| Sbjct 45639 TCCAAGGTGATGGTCTTTCCCGT 45661 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || ||||| ||||||||||| || || || Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || | | || || || || || Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||||| || ||| |||||||| || | ||| || || Sbjct 45068 ATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACC 45127 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| ||||||||||| || ||||| Sbjct 45128 TCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 >seq151 Length=370960 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| ||||||||||| || |||||| Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | ||||| || || ||| Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 ||||| ||||||||||| ||||| | |||||| Sbjct 220993 ATGCCCTCCTTGTCTTGGATCTTGGACTTGAC 221024 >seq244 Length=165466 Score = 102 bits (112), Expect = 2e-16 Identities = 271/411 (66%), Gaps = 20/411 (5%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| || || ||||||||||| || || || |||||||||||||| ||||||| | Sbjct 55999 CATAACACCGGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGC 56058 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||| ||||||||||| || ||| | |||| || || Sbjct 56059 CAGGGAGATGTTCTCCATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCC 56118 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| ||| || | ||||| || || ||||| |||||||||| ||| ||| | || Sbjct 56119 GAGGGCTAAGAGCAGACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATT 56178 Query 10115 CATGCCAATCA-TGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||| | || ||| ||| || | | ||| | | ||| |||| || ||| ||| | Sbjct 56179 CATGCCGAGCAGTGC-GCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGG 56237 Query 10174 CTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTT---------CTCGAGCT 10224 | || || |||| |||| ||| | | ||||| | || ||| | Sbjct 56238 CCTCAGTGATGATG-TCTT--GCAC------AGCCTGCTTGCTTGGGCGCGACTTGAGGT 56288 Query 10225 TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGT 10284 ||| | ||||| |||| | ||| | |||||||| || ||||| ||| | Sbjct 56289 GGGAAAAGAGGAGGCAGGCAAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCAT 56348 Query 10285 TGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG 10335 |||| || ||||| |||||||| || || || |||||||| |||| Sbjct 56349 TGGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG 56399 >seq210 Length=320770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| ||| || || ||| | | ||| ||| |||||||||| || |||||||| ||| Sbjct 304457 TTCTGCTCATAGTGGTAAATGTCTGTGCAAACTTCGTCAAGGAAACCCGAGTCGTGAGAC 304516 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTG 225529 ||||| | | | | | || ||| ||| |||| | |||||| ||||| Sbjct 304517 ACAATCAAGCTAGTAATCTCAGTGTGGCTCTTCAGGTACTCTTGGAGCCACTTGACGTTC 304576 Query 225530 CTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATG 225589 || |||| ||| || ||||||||||| || ||||||| || || || || ||| Sbjct 304577 GCAACATCCAAGTGATTGGTAGGTTCGTCAAGGAGCAGGACATCTGCTCGCATCAGCATG 304636 Query 225590 GCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACA 225629 || | | | || |||||||| |||||||| ||||||| Sbjct 304637 GCCCTAGCCAAAGCTAGCTTCATCTTCCAGCCTCCGGACA 304676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617503881000