Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9 105 6e-18 >seq9 Length=355999 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || | ||| | || ||||| || || |||||||| ||| Sbjct 45173 ATACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 45232 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || ||||| ||||||||| |||| | ||||||||||| ||| Sbjct 45233 GACAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGA 45292 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||| ||| || | | || | ||| || | ||||||| Sbjct 45293 GGAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCG 45352 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | ||| | || |||||||||| Sbjct 45353 ACTTCGAGGGTGATGGTCTTGCCGGTCA 45380 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 |||||||| || | | || || || | || ||||| || || |||||||| ||| Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| ||||| || ||||||||| | ||||||||||||||||| || || Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || || || ||||| ||| | | || | |||||| | || || || Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| |||||||| || || ||||||||||| Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||||| || ||||| || || |||||||| ||| Sbjct 45456 ATACCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCG 45515 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||| || || || || ||| |||| | ||||||||||| || Sbjct 45516 GACAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGG 45575 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| || || |||| | || | |||||||| ||| ||| Sbjct 45576 GGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCG 45635 Query 114333 ACGTCCACGGT 114343 || |||| ||| Sbjct 45636 ACTTCCAAGGT 45646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132223835100