Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq244 260 3e-64 seq164 100 5e-16 >seq244 Length=165466 Score = 260 bits (288), Expect = 3e-64 Identities = 375/519 (72%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| |||||||| || |||||| | | || | || Sbjct 56523 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTTCGATGGATCACGGATAAGAACTCCACC 56464 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || ||| | | || | |||||| ||||||| ||||| ||||||||| || ||||| Sbjct 56463 TTTGGCACGCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTT 56404 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||||||||||||||| || || || ||||| || ||||||||||| || || Sbjct 56403 GCATCCATCTTCTGGCTCAAGAAGCGTGGCCTC-ATGCCAGGTCTCACCTTCTCCAATGA 56345 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | |||||||| |||| | ||||||||||||||||| || || ||| Sbjct 56344 GCTCATCTCTCGTGACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCTTTTC---CCA 56288 Query 42872 CCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 ||||| | | |||| | ||| || || | | ||||||||| |||||||| | Sbjct 56287 CCTCAAG-TCGCGCCCAAGCAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCA 56229 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACGA 42988 | ||| |||||||| | | |||| |||| | ||| |||||||||| |||| Sbjct 56228 TTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCAC-- 56171 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT--GCCAGATGGGTCTC 43046 |||||||||| ||||||| ||| || ||||||| ||| || | ||| | || | Sbjct 56170 CCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCC--CTCGGCAAC 56113 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | |||||||| | | ||||| |||||||||||||||||||| ||| |||| Sbjct 56112 AACAAGTTCTACAACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGC 56053 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| ||||||||||| || | ||||||||| Sbjct 56052 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAG 56014 >seq164 Length=316633 Score = 100 bits (110), Expect = 5e-16 Identities = 310/475 (65%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 ||||| | ||| |||| |||||| || | ||| | || |||||| | |||||||||| Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGC 245089 || || || | ||| | ||| | | | ||| ||| ||| || ||||| || Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181 Query 245090 TCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGC 245149 || | ||| | || |||||| ||||||| ||||| | |||| |||| ||| || || Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241 Query 245150 CGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGG 245208 ||||| || || ||||| || || ||| | | | |||| ||| ||| || | || Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTG-TTGTTGTAGACGCGGAGCATGGG 150300 Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTT 245268 | | || || ||| || ||||| || || |||| ||| | | | || | Sbjct 150301 GATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGC---GCGGAT 150357 Query 245269 GCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGA 245324 | |||| |||| || | ||||| || |||||| || | ||| || |||| | Sbjct 150358 AC-GATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCA 150416 Query 245325 TGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACA 245384 |||||| || || || ||||| || ||| |||| || || ||||| ||||||| Sbjct 150417 GGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACA 150476 Query 245385 GCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || || ||| ||| | |||||| || || || ||| || || ||||| Sbjct 150477 TTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTA 150531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334183198000