Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq9 136 9e-27
>seq9
Length=355999
Score = 136 bits (150), Expect = 9e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
||||| || || || | || || | |||| || ||| || ||||| || ||||||
Sbjct 44717 TGTCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 44776
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| |||||| || || || || | || || || ||||| || ||||||||||| | |
Sbjct 44777 GAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGT 44836
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || ||||| ||||| |||| ||| ||||| || || | || || ||
Sbjct 44837 GGGATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCA 44896
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 44897 ACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 107 bits (118), Expect = 5e-18
Identities = 148/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || |||||||| | ||| ||| || ||||| || |||||||
Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| | || || ||||||||||||| |||||||| ||||||
Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTG---GTCTGGG 45575
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||||||||| | || || || || || | ||| || ||
Sbjct 45576 GGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCG 45635
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449
||||| | ||||| ||||| || ||
Sbjct 45636 ACTTCCAAGGTGATGGTCTTTCCCGT 45661
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||| | || || || || || || | || ||||| || |||
Sbjct 44984 TCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAG 45043
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| |||||| ||| ||||| || ||||| ||||| || || | ||| |||||
Sbjct 45044 ATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTG 45103
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || || || || ||||| ||||| || || || |||||||||
Sbjct 45104 TCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACG 45163
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 45164 AAGATTTGCAT 45174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179647976413150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |