Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 136 9e-27 >seq9 Length=355999 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | || || | |||| || ||| || ||||| || |||||| Sbjct 44717 TGTCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCG 44776 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | |||||| || || || || | || || || ||||| || ||||||||||| | | Sbjct 44777 GAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGT 44836 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| ||||| |||| ||| ||||| || || | || || || Sbjct 44837 GGGATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCA 44896 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 44897 ACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 107 bits (118), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| ||| || ||||| || ||||||| Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || ||||||||||||| |||||||| |||||| Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTG---GTCTGGG 45575 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||||||||| | || || || || || | ||| || || Sbjct 45576 GGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCG 45635 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||||| | ||||| ||||| || || Sbjct 45636 ACTTCCAAGGTGATGGTCTTTCCCGT 45661 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || || || || || || | || ||||| || ||| Sbjct 44984 TCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAG 45043 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| ||| ||||| || ||||| ||||| || || | ||| ||||| Sbjct 45044 ATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTG 45103 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || || ||||| ||||| || || || ||||||||| Sbjct 45104 TCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACG 45163 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 45164 AAGATTTGCAT 45174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647976413150