Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq244 89.7 1e-12 >seq244 Length=165466 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | || |||| ||| | | ||| || | |||||| Sbjct 56250 ATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATGCGCA 56191 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | |||||||| | |||||| | |||||||| || || || |||||||| | Sbjct 56190 CTGCTCGGCATGAATGCCACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCTG 56131 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || || || | | || | |||||| | | || ||||||| |||||||||| Sbjct 56130 CTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTACCAATCCCTTTGACTTTATGGAG 56071 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACG 243740 ||| || || || || || ||||||||||| |||||||| |||| || || | | Sbjct 56070 AACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAG 56011 Query 243741 CCCTGGTGTGATG 243753 || ||||| ||| Sbjct 56010 GCC-GGTGTTATG 55999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873994473750