Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq164 116 4e-21 seq244 98.7 1e-15 seq43 93.3 5e-14 >seq164 Length=316633 Score = 116 bits (128), Expect = 4e-21 Identities = 401/621 (65%), Gaps = 6/621 (1%) Strand=Plus/Plus Query 114702 TTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 114760 ||||| ||||| | |||||||| ||||| | || | ||| || || || | | Sbjct 150002 TTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTG 150061 Query 114761 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATC 114820 |||||||| |||| ||||| || ||| | |||||||||||||| | ||| |||||| Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121 Query 114821 CAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 114880 || || || |||| | || ||| || | ||||| | || ||||| | | Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181 Query 114881 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 114940 || | ||| | | | || |||||||| || || || || | |||| | ||| | Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241 Query 114941 CG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGA 114997 || | ||| |||| | || || | || ||| || | ||||| ||||| || Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGG 150301 Query 114998 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA 115057 |||| ||||| || ||||| || || | |||| || | | || | || | | Sbjct 150302 ATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGA 150361 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 || | | || ||||||||| || || ||| || || || || | | || || Sbjct 150362 TGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTG 150421 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177 | ||||| || || || ||| |||| | |||| |||||||| ||||||||| Sbjct 150422 TCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGT 150481 Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 115236 || || || || |||||||||||||| || | || || |||| || | | || Sbjct 150482 GGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTGA 150540 Query 115237 CATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 115296 ||| | | || ||||| | ||| ||||||||| |||||||| || | | || Sbjct 150541 CATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTAC 150600 Query 115297 CCGCATAAACATGTATTGGGG 115317 ||||||| ||||| ||| || Sbjct 150601 ACGCATAAGCATGTGTTGAGG 150621 >seq244 Length=165466 Score = 98.7 bits (108), Expect = 1e-15 Identities = 278/422 (66%), Gaps = 10/422 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| ||||||||||||||||| ||||| || ||| | ||| |||||||| Sbjct 56017 GTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCAT 56076 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 ||| ||||| || || | | ||| | | |||||| || || ||| ||| Sbjct 56077 AAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAA--GAGCAGA 56134 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | || |||||||||||| |||| | ||||| |||| || Sbjct 56135 CGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCG 56194 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 ||||| | | || | | |||| ||| |||||| ||||| || | |||| | Sbjct 56195 CATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCT 56254 Query 125996 TGAATGGTGTCCACCCCAGGTCTA---TTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 || | | | | | || | ||| | | || ||| || |||||| Sbjct 56255 TGCACAGCCTGCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAGG--CA-GGCAAAG 56311 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| | |||||||||||| |||||||| ||||| |||||| || ||||||||| Sbjct 56312 TCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATG 56371 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || | ||| | ||| ||||||||| ||||| Sbjct 56372 AGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCA 56431 Query 126173 AC 126174 || Sbjct 56432 AC 56433 >seq43 Length=94656 Score = 93.3 bits (102), Expect = 5e-14 Identities = 272/417 (65%), Gaps = 29/417 (7%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 || ||||| || ||||| | |||||| | ||| | | || ||| || || | || Sbjct 69287 TCGAAGCGGCCAGGGCGCATGAGGGCTTTGTCCAAAACGTCGGGGCGATTAGTACCGGCA 69228 Query 10850 ATGACAACGATGCCCGTCTCGT--TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907 | || |||| || || | | ||| ||||||||||| || |||| || ||||||| Sbjct 69227 AGCACGACGA--CCTGTTCCTTCGTATTGAAGCCATCCATTTCCGTCAGGATCTGATTGA 69170 Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTA------- 10960 || || ||||||||||| |||||| || | ||||||| Sbjct 69169 GAGTCGCCTCACGTTCATCATT---------ACCACCGCCATAGTTTTGCTTAGAACGGG 69119 Query 10961 -----CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAA 11015 || | ||||||||||| |||||||||| ||| || || | | | ||||| Sbjct 69118 ATCGTCCTATAGCGTCAATTTCGTCGATGAAAATGATGCAAGGAGTACTCTTGCGGGCGT 69059 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | | || | ||| | ||||| |||||| ||||| ||||||||||| || || | || Sbjct 69058 TTGCGAACAGATCCCTGACTCGGGAGGCACCAACACCAACAAACATTTCAACGAACTCGG 68999 Query 11076 --CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 | | | ||| | || ||| || || ||||| |||||| | || ||| || | Sbjct 68998 AACCACTG-ACACT-GAAGAATGGAACTCCAGATTCTCCCGCGGTTGCCTTGGCAAGCAA 68941 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 ||| || || || ||||| || | |||| |||||||||||||||| | || || Sbjct 68940 GGTTTTACCAGTACCAGGGGGGCCGGATAGAATGGCACCACGTGGGATCTTTGCGCC 68884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350426559000