Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq164 116 4e-21
seq244 98.7 1e-15
seq43 93.3 5e-14
>seq164
Length=316633
Score = 116 bits (128), Expect = 4e-21
Identities = 401/621 (65%), Gaps = 6/621 (1%)
Strand=Plus/Plus
Query 114702 TTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 114760
||||| ||||| | |||||||| ||||| | || | ||| || || || | |
Sbjct 150002 TTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTG 150061
Query 114761 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATC 114820
|||||||| |||| ||||| || ||| | |||||||||||||| | ||| ||||||
Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121
Query 114821 CAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 114880
|| || || |||| | || ||| || | ||||| | || ||||| | |
Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181
Query 114881 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 114940
|| | ||| | | | || |||||||| || || || || | |||| | ||| |
Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241
Query 114941 CG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGA 114997
|| | ||| |||| | || || | || ||| || | ||||| ||||| ||
Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGG 150301
Query 114998 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCA 115057
|||| ||||| || ||||| || || | |||| || | | || | || | |
Sbjct 150302 ATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGA 150361
Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117
|| | | || ||||||||| || || ||| || || || || | | || ||
Sbjct 150362 TGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTG 150421
Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177
| ||||| || || || ||| |||| | |||| |||||||| |||||||||
Sbjct 150422 TCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGT 150481
Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 115236
|| || || || |||||||||||||| || | || || |||| || | | ||
Sbjct 150482 GGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTGA 150540
Query 115237 CATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 115296
||| | | || ||||| | ||| ||||||||| |||||||| || | | ||
Sbjct 150541 CATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTAC 150600
Query 115297 CCGCATAAACATGTATTGGGG 115317
||||||| ||||| ||| ||
Sbjct 150601 ACGCATAAGCATGTGTTGAGG 150621
>seq244
Length=165466
Score = 98.7 bits (108), Expect = 1e-15
Identities = 278/422 (66%), Gaps = 10/422 (2%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| ||||| ||||||||||||||||| ||||| || ||| | ||| ||||||||
Sbjct 56017 GTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCAT 56076
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
||| ||||| || || | | ||| | | |||||| || || ||| |||
Sbjct 56077 AAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAA--GAGCAGA 56134
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | || |||||||||||| |||| | ||||| |||| ||
Sbjct 56135 CGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCG 56194
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
||||| | | || | | |||| ||| |||||| ||||| || | |||| |
Sbjct 56195 CATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCT 56254
Query 125996 TGAATGGTGTCCACCCCAGGTCTA---TTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052
|| | | | | | || | ||| | | || ||| || ||||||
Sbjct 56255 TGCACAGCCTGCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAGG--CA-GGCAAAG 56311
Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112
|| ||| | |||||||||||| |||||||| ||||| |||||| || |||||||||
Sbjct 56312 TCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATG 56371
Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172
|| || |||||||| | |||||| || | ||| | ||| ||||||||| |||||
Sbjct 56372 AGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCA 56431
Query 126173 AC 126174
||
Sbjct 56432 AC 56433
>seq43
Length=94656
Score = 93.3 bits (102), Expect = 5e-14
Identities = 272/417 (65%), Gaps = 29/417 (7%)
Strand=Plus/Minus
Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849
|| ||||| || ||||| | |||||| | ||| | | || ||| || || | ||
Sbjct 69287 TCGAAGCGGCCAGGGCGCATGAGGGCTTTGTCCAAAACGTCGGGGCGATTAGTACCGGCA 69228
Query 10850 ATGACAACGATGCCCGTCTCGT--TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907
| || |||| || || | | ||| ||||||||||| || |||| || |||||||
Sbjct 69227 AGCACGACGA--CCTGTTCCTTCGTATTGAAGCCATCCATTTCCGTCAGGATCTGATTGA 69170
Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTA------- 10960
|| || ||||||||||| |||||| || | |||||||
Sbjct 69169 GAGTCGCCTCACGTTCATCATT---------ACCACCGCCATAGTTTTGCTTAGAACGGG 69119
Query 10961 -----CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAA 11015
|| | ||||||||||| |||||||||| ||| || || | | | |||||
Sbjct 69118 ATCGTCCTATAGCGTCAATTTCGTCGATGAAAATGATGCAAGGAGTACTCTTGCGGGCGT 69059
Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075
| | || | ||| | ||||| |||||| ||||| ||||||||||| || || | ||
Sbjct 69058 TTGCGAACAGATCCCTGACTCGGGAGGCACCAACACCAACAAACATTTCAACGAACTCGG 68999
Query 11076 --CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133
| | | ||| | || ||| || || ||||| |||||| | || ||| || |
Sbjct 68998 AACCACTG-ACACT-GAAGAATGGAACTCCAGATTCTCCCGCGGTTGCCTTGGCAAGCAA 68941
Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190
||| || || || ||||| || | |||| |||||||||||||||| | || ||
Sbjct 68940 GGTTTTACCAGTACCAGGGGGGCCGGATAGAATGGCACCACGTGGGATCTTTGCGCC 68884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597350426559000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |