Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq9 100 3e-16
>seq9
Length=355999
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| |||||| |||| || ||||||||| || ||||| || | |||||| || |
Sbjct 44959 ACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCC 45018
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || || || || | |||||||| || | || | | ||| ||
Sbjct 45019 ATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTT 45078
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
|||| ||| | |||| || ||| | | | || || || || || || | ||||
Sbjct 45079 GTCC-TGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGA 45137
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||| || || ||||| || |||||||||||
Sbjct 45138 TGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || | || || || | || || |||||||||||||||||
Sbjct 44756 TCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAA 44815
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
||||| ||||| ||||| | ||| | | |||||| || ||| || ||||| |||
Sbjct 44816 ATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTCGATTTGA-CGTT 44874
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| || || || |||| ||||| || ||||| || || ||||| ||
Sbjct 44875 GTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAAC 44934
Query 42197 AAAGATTTGCAT 42208
|| || |||||
Sbjct 44935 GAAAATCTGCAT 44946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543209914182000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |