Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 seq382 96.9 3e-15 seq151 84.2 2e-11 >seq9 Length=355999 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||||| || ||||| || || |||||||| || | Sbjct 45175 ACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 45234 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || || ||||| || || | || | ||||| ||||| ||||| Sbjct 45235 CAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGG 45294 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || |||||| ||| ||| || | |||||| || || || Sbjct 45295 AATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGAC 45354 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421 ||| | || | |||||||||||||| Sbjct 45355 TTCGAGGGTGATGGTCTTGCCGGTCA 45380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||||| | |||| || ||||| || || |||||||| || | | Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || ||||||||||| || || ||||||| ||||| ||||| || || Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || || || || | || || | || || Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||||| |||| ||| || |||||||| ||||| Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| || || |||||||| || | | |||||| ||||| Sbjct 45474 AGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 45533 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | ||||| ||||| || ||||| || || || || Sbjct 45534 TCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 45593 Query 64352 TGTATTTTTTGCTTTACA 64369 || ||||| ||||||| Sbjct 45594 TGGATTTTGGACTTTACA 45611 >seq382 Length=167612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||| | || || || || || |||||||| || | Sbjct 145481 ACCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 145422 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| |||| ||||||||||| || ||| | ||||| ||||||||||| || || Sbjct 145421 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 145362 Query 64336 AATTCCTTCTTTTTCT 64351 ||| || || || ||| Sbjct 145361 AATGCCCTCCTTGTCT 145346 >seq151 Length=370960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | ||| || | || | || || || ||||| |||||||| || | Sbjct 220872 ACCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 220931 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| || |||||||||||||| | || || ||||| || || || || Sbjct 220932 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGG 220991 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || || ||||| || || Sbjct 220992 AATGCCCTCCTTGTCTTGGATCTT 221015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642145637000