Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq164 190 2e-43 >seq164 Length=316633 Score = 190 bits (210), Expect = 2e-43 Identities = 439/654 (67%), Gaps = 8/654 (1%) Strand=Plus/Minus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| || || || || ||||| |||| || |||||| |||| | || || || Sbjct 150678 TTCAAGACCCTTGAACGATCATACCTGCTCAGAATCAATGGCAAGGTTGCTGAACGTCCT 150619 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTTG 93852 || || |||| ||||| || || | || ||||||||| | ||||| | | | Sbjct 150618 CAACACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATC 150559 Query 93853 CGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCACCCCGACCCTGTTCAA 93911 | | | | ||||| |||| | || |||| || | |||||||| ||||| Sbjct 150558 GAGACATATAACTACATGTCAAACAAATACTTCACACATG-CCTCGCCGACCCTCTTCAA 150500 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAAGGCCGACT 93970 ||| || |||||| ||||| ||||| || || ||||| || ||| | ||||| || Sbjct 150499 CGCAGGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGAC-ATCAAGGATGATA 150441 Query 93971 CCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGG 94030 ||| || || | |||| ||| ||| ||||| | || || || || || | Sbjct 150440 GCATTGAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCG 150381 Query 94031 GAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTACATCCGCGGTACCAA 94088 | || || | | ||| || |||| || || | || ||||| || |||| ||||| Sbjct 150380 GTATTGGTCTGAATGTGCAT--CGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAA 150323 Query 94089 TGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGT 94148 ||| |||||||| || ||| |||| |||||||| |||| ||||||| | || || ||||| Sbjct 150322 TGGTACCTCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGT 150263 Query 94149 GGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGC 94208 || |||||||| | | | |||| | ||||| ||||||||||||| |||||||| Sbjct 150262 CGATCAGGGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGC 150203 Query 94209 GGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAG 94268 ||||| | ||| | || || | || || || || || || || | || | Sbjct 150202 CGACGTTTTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGGTCCGTGCTCG 150143 Query 94269 AGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTC 94328 ||| | |||||||| || ||| | || ||| | || ||||| || ||| | | ||| Sbjct 150142 CGACTTGTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGG 150083 Query 94329 CGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGG 94382 || |||| ||| || || ||||| ||| ||| || || ||||||||| ||| Sbjct 150082 CGAATGGACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGG 150029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720571783000