Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq244 125 7e-24
seq9 113 4e-20
seq151 84.2 2e-11
>seq244
Length=165466
Score = 125 bits (138), Expect = 7e-24
Identities = 136/175 (78%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 52665 CTGCTGGGCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCT 52723
||||| |||||||| || || | ||||||| ||||||| |||||||| || || |||||
Sbjct 56190 CTGCTCGGCATGAATGC-CACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCT 56132
Query 52724 GTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGA 52782
| | | ||||| || | | |||| || ||||||| |||||| ||||| ||||||
Sbjct 56131 GCTCTTAGCCCTCGG-CAACAACAAGTTCTACAACGCTACCAATCCCTTTGACTTTATGG 56073
Query 52783 ACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| ||||| || || | ||||||||||||||| ||||||||||| || || || ||
Sbjct 56072 AGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 56018
>seq9
Length=355999
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||| | || || || | | |||| ||||| || ||||||||||||
Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || ||||| | | || |||||||||||||| || ||
Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| || ||| | | || | |||||| | ||||| |||
Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || ||||||||||| || || |||||||||||
Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||| || || || | ||||||||||||| ||||||||||| |
Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || |||||||| || || |||| | |||| | |||||| || ||||| ||
Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| |||||||| ||| | |||| ||||| | || | ||| || | ||||| ||
Sbjct 45068 ATACCCTCTTTGTC-CTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGAC 45126
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||| || || || || || || |||||
Sbjct 45127 CTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
>seq151
Length=370960
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||| | || || || | | ||||||||||| ||||||||||||
Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||||||| || || |||| |||| || |||||||| ||||| ||
Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 220993 ATGCCCTCCTTGTC 221006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259763606000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |