Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq244 104 2e-17 >seq9 Length=355999 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || || || || || || ||||| ||| | Sbjct 45176 CCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45235 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || |||||| ||||||||||||| || || ||||| Sbjct 45236 AAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGA 45295 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| || ||| | | |||| ||| || | ||||| Sbjct 45296 ATGCCCTCCTTGTCC-TGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGAC 45354 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 ||||| ||| | || |||||||||| Sbjct 45355 TTCGAGGGTGATGGTCTTGCCGGTCA 45380 Score = 105 bits (116), Expect = 6e-18 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 126876 ACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATAT 126935 ||| ||||| ||| || || | || | |||||| || | || || || || || || | Sbjct 44710 ACTCTACTG-TCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGT 44768 Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995 |||| ||| | ||| || ||| || ||||| || |||||| | || | ||||| | Sbjct 44769 TGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTT 44828 Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCC 127054 | || || || || |||||||| || ||| ||| |||| ||||| ||| |||||| Sbjct 44829 GGTCAGGTGGGATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGT-CGATGGTGTCT 44887 Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | ||| || |||| || | || ||||| |||||||| || || ||||||||||| Sbjct 44888 GAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||| ||||| || ||||| || | Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||| || ||||||| ||||||||||| || || Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG--CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||||| |||||| ||| | | || || |||| |||| ||| |||| ||||| Sbjct 45068 ATACCCTCTTTGTCC-TGAATCTTTGATTTTACGTTG-TCGATGGTATCCGATGACTCGA 45125 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || ||||| || || || || || || || ||||| Sbjct 45126 CCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | || | ||||| || || || || || || ||||| ||| | Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| ||||| || || || || Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| |||||| ||| | | |||| |||||| | ||||||| Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACT 45638 Query 127067 TCGACGGT 127074 || | ||| Sbjct 45639 TCCAAGGT 45646 >seq244 Length=165466 Score = 104 bits (114), Expect = 2e-17 Identities = 290/443 (65%), Gaps = 9/443 (2%) Strand=Plus/Minus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| | ||||| || ||| ||| ||||| |||||||| || |||||| | || Sbjct 56454 CGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATC 56395 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | ||||| || ||||| || ||| ||||| ||||| Sbjct 56394 TTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCT 56335 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTA---CAACACTAGAGTCGAT 47315 | ||||| || ||||||| |||||||||| ||| || | || || ||||| Sbjct 56334 CGTGACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCAC-CTCAAGTCGCG 56276 Query 47316 CAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG 47375 | ||| | || | || ||||| | | || |||||| |||||||| | Sbjct 56275 CCCAAG-----CAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAG 56221 Query 47376 GAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGA 47435 ||||| || ||||| || |||| | | | || ||||| || | ||| | Sbjct 56220 GAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGC 56161 Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTAC 47495 ||||||| || ||||| |||||||| |||||| | || | |||| | ||| Sbjct 56160 CAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTAC 56101 Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555 || | ||||| || || |||||| | ||||| || || | ||||||||||||||| Sbjct 56100 AACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTC 56041 Query 47556 TTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||| || || || || Sbjct 56040 TTCGAGAAGCGTGTTGGTGACTA 56018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498273902000