Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq9 107 2e-18
seq244 104 2e-17
>seq9
Length=355999
Score = 107 bits (118), Expect = 2e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | || | ||| | || || || || || || ||||| ||| |
Sbjct 45176 CCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45235
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || || |||||| ||||||||||||| || || |||||
Sbjct 45236 AAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGA 45295
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| ||| || ||| | | |||| ||| || | |||||
Sbjct 45296 ATGCCCTCCTTGTCC-TGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGAC 45354
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091
||||| ||| | || ||||||||||
Sbjct 45355 TTCGAGGGTGATGGTCTTGCCGGTCA 45380
Score = 105 bits (116), Expect = 6e-18
Identities = 169/239 (71%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 126876 ACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATAT 126935
||| ||||| ||| || || | || | |||||| || | || || || || || || |
Sbjct 44710 ACTCTACTG-TCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGT 44768
Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995
|||| ||| | ||| || ||| || ||||| || |||||| | || | ||||| |
Sbjct 44769 TGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTT 44828
Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCC 127054
| || || || || |||||||| || ||| ||| |||| ||||| ||| ||||||
Sbjct 44829 GGTCAGGTGGGATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGT-CGATGGTGTCT 44887
Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| | ||| || |||| || | || ||||| |||||||| || || |||||||||||
Sbjct 44888 GAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 102 bits (112), Expect = 8e-17
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||| || | || ||||| ||||| || ||||| || |
Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| ||||| || ||||||| ||||||||||| || ||
Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG--CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| ||||| |||||| ||| | | || || |||| |||| ||| |||| |||||
Sbjct 45068 ATACCCTCTTTGTCC-TGAATCTTTGATTTTACGTTG-TCGATGGTATCCGATGACTCGA 45125
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | || ||||| || || || || || || || |||||
Sbjct 45126 CCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | || | ||||| || || || || || || ||||| ||| |
Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| ||||||| ||||| || || || ||
Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| |||||| ||| | | |||| |||||| | |||||||
Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACT 45638
Query 127067 TCGACGGT 127074
|| | |||
Sbjct 45639 TCCAAGGT 45646
>seq244
Length=165466
Score = 104 bits (114), Expect = 2e-17
Identities = 290/443 (65%), Gaps = 9/443 (2%)
Strand=Plus/Minus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
||| | ||||| || ||| ||| ||||| |||||||| || |||||| | ||
Sbjct 56454 CGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATC 56395
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | | || | || | ||||| || ||||| || ||| ||||| |||||
Sbjct 56394 TTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCT 56335
Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTA---CAACACTAGAGTCGAT 47315
| ||||| || ||||||| |||||||||| ||| || | || || |||||
Sbjct 56334 CGTGACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCTTTTCCCAC-CTCAAGTCGCG 56276
Query 47316 CAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATG 47375
| ||| | || | || ||||| | | || |||||| |||||||| |
Sbjct 56275 CCCAAG-----CAAGCAGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAG 56221
Query 47376 GAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGA 47435
||||| || ||||| || |||| | | | || ||||| || | ||| |
Sbjct 56220 GAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGC 56161
Query 47436 AAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTAC 47495
||||||| || ||||| |||||||| |||||| | || | |||| | |||
Sbjct 56160 CAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTAC 56101
Query 47496 CACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTT 47555
|| | ||||| || || |||||| | ||||| || || | |||||||||||||||
Sbjct 56100 AACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTC 56041
Query 47556 TTCGAGAAGCGCGTCGGCGAATA 47578
||||||||||| || || || ||
Sbjct 56040 TTCGAGAAGCGTGTTGGTGACTA 56018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498273902000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |