Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq164 86.0 6e-12 >seq9 Length=355999 Score = 114 bits (126), Expect = 1e-20 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || ||| | ||||| ||||| ||||||||||| || || | Sbjct 44945 ATACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGT-- 45002 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||||| | || | ||| || | || ||||| || | ||||| || ||||| |||| Sbjct 45003 CTGACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCG 45062 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 |||| || || ||||| || ||||| ||| ||| | || | || | ||| || || ||| Sbjct 45063 GCGGGATACCCTCTTTGTCCTGAATCTTTGATTTTA-CGTTGTCGATGGTATCCGATGAC 45121 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| | || ||||| || || || || || || |||||||| Sbjct 45122 TCGACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || || ||| || ||| ||| || | || Sbjct 44744 TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGC 44803 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || || ||||| || || || || || |||||||| || || Sbjct 44804 TTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTC 44863 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | |||||| |||||||| || |||||||| | || ||||| || Sbjct 44864 GATTTGA-CGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGT 44922 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| ||||| Sbjct 44923 CAGAGTCTTAACGAAAATCTGCAT 44946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || ||||| || || |||||||| ||||| || || ||| Sbjct 45173 ATACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 45232 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| ||| || || ||| | |||||||| || ||||| || Sbjct 45233 GACAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGA 45292 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||||||| || | || | ||| || || || ||| Sbjct 45293 GGAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCG 45352 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||||| || | || |||||||| Sbjct 45353 ACTTCGAGGGTGATGGTCTTGCCGGT 45378 >seq164 Length=316633 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124094 CCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGG-A 124152 || |||||| ||||| |||||||||||||| | || || || || | ||||||||| | Sbjct 149382 CCAAGGTATCTTGCAATACGACATGTGGAACGTCACCCCTACTGATCTTTGGGACTGGGA 149323 Query 124153 GCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACA 124212 || || | | ||| | ||| ||| |||| |||||||| | || || | Sbjct 149322 TTCATTGAAGGCCAA-CATTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTA 149264 Query 124213 TGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTA 124272 |||| ||||| |||| |||| ||| | ||||||||||| | ||| ||||| | || Sbjct 149263 TGCCAACGGCTTCCACCTCTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCT 149204 Query 124273 ACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATC 124323 || | ||| || || || || ||||| || || ||||| |||||| Sbjct 149203 CAAACATTTACTCTCGCCGTGTCTTGGCCGGTGAGTTCCAAGTTGTAAATC 149153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000798733000