Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq9 114 1e-20
seq164 86.0 6e-12
>seq9
Length=355999
Score = 114 bits (126), Expect = 1e-20
Identities = 168/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | || ||| | ||||| ||||| ||||||||||| || || |
Sbjct 44945 ATACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGT-- 45002
Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||||| | || | ||| || | || ||||| || | ||||| || ||||| ||||
Sbjct 45003 CTGACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCG 45062
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
|||| || || ||||| || ||||| ||| ||| | || | || | ||| || || |||
Sbjct 45063 GCGGGATACCCTCTTTGTCCTGAATCTTTGATTTTA-CGTTGTCGATGGTATCCGATGAC 45121
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || ||||| | || ||||| || || || || || || ||||||||
Sbjct 45122 TCGACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || ||||||||||| ||||| || || ||| || ||| ||| || | ||
Sbjct 44744 TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGC 44803
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | || | || || ||||| || || || || || |||||||| || ||
Sbjct 44804 TTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTC 44863
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
||||| || | || | |||||| |||||||| || |||||||| | || ||||| ||
Sbjct 44864 GATTTGA-CGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGT 44922
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || ||||| |||||
Sbjct 44923 CAGAGTCTTAACGAAAATCTGCAT 44946
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | | || ||||| || || |||||||| ||||| || || |||
Sbjct 45173 ATACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 45232
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| |||| ||| || || ||| | |||||||| || ||||| ||
Sbjct 45233 GACAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGA 45292
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || ||||||||| || | || | ||| || || || |||
Sbjct 45293 GGAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCG 45352
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||||||| || | || ||||||||
Sbjct 45353 ACTTCGAGGGTGATGGTCTTGCCGGT 45378
>seq164
Length=316633
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124094 CCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGG-A 124152
|| |||||| ||||| |||||||||||||| | || || || || | ||||||||| |
Sbjct 149382 CCAAGGTATCTTGCAATACGACATGTGGAACGTCACCCCTACTGATCTTTGGGACTGGGA 149323
Query 124153 GCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACA 124212
|| || | | ||| | ||| ||| |||| |||||||| | || || |
Sbjct 149322 TTCATTGAAGGCCAA-CATTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTA 149264
Query 124213 TGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTA 124272
|||| ||||| |||| |||| ||| | ||||||||||| | ||| ||||| | ||
Sbjct 149263 TGCCAACGGCTTCCACCTCTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCT 149204
Query 124273 ACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATC 124323
|| | ||| || || || || ||||| || || ||||| ||||||
Sbjct 149203 CAAACATTTACTCTCGCCGTGTCTTGGCCGGTGAGTTCCAAGTTGTAAATC 149153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000798733000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |