Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq164 141 1e-28
seq244 100 3e-16
>seq164
Length=316633
Score = 141 bits (156), Expect = 1e-28
Identities = 701/1099 (64%), Gaps = 24/1099 (2%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||| ||||| ||| | | ||| | | ||| |||||||||| || |||||||| |
Sbjct 148817 TGAATTGAATTGGTGCAGACGCCGCCATGGTTCGAAGGTAGTACAAGCCAGTCTTGAGAC 148876
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
| ||||||| || | ||||| || | | ||| | || || | ||||
Sbjct 148877 CAAGCTTCCACCCAGCGAAGTGCATGGATGTAATCTTACCCATGGTAGGCTCCTTCATGT 148936
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| ||| | |||||| ||||||||||| ||| ||||| || ||||| | | ||
Sbjct 148937 GGATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGA-CA 148995
Query 115706 CATCCTTCATCT-TGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762
|| ||| ||| ||| ||||||| || || ||||||| ||| || ||||| ||||
Sbjct 148996 -ATGGTTC-TCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGA 149053
Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCT 115819
| | || | || ||||| || ||| | || | |||| | | |||||| | |
Sbjct 149054 TGTTGGGAATCCTCTGAATAGAACCGCCTTC--TG-CAATGATTCGGTTCTTCATGTTGT 149110
Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879
||||| ||||| || | || |||| || || ||| ||||| ||||
Sbjct 149111 CCGACCACAGACCCATATCTACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACT 149170
Query 115880 CACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938
|||| || | | || | ||| || ||||| | || ||||||||||||||||| |||
Sbjct 149171 CACCGGCCAAGACACGGCG-AGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTG 149229
Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998
|| || | || || | ||||| || || ||||| || || | || || ||| ||
Sbjct 149230 TTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGC 149289
Query 115999 AGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCT 116056
| ||| | |||| |||| | | |||||||| | | | || | |
Sbjct 149290 ACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAG--TAGGGG 149347
Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116
| | |||||| || | || | ||||||||||||| | || || || || | ||
Sbjct 149348 TGACGTTCCACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGG 149407
Query 116117 CATATGGGCCCTCAACCTCCGCC--AAT-TCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173
|||| || || || |||| ||| ||| || || |||||| || || || |
Sbjct 149408 CATAAGGACC---AAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAA 149464
Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233
| || ||||| || ||| || | | | ||||| |||||||| | | |||
Sbjct 149465 TGGTTTCAAAGATCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGA 149524
Query 116234 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 116293
|| ||| |||| ||||||||||||||||||||||| || || || || || | ||
Sbjct 149525 GGGCAAGGAATGCATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAAT 149584
Query 116294 TAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 116353
| || || || ||||| || ||| ||||| | | ||||| ||
Sbjct 149585 TGCTGCGGCGTGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGC 149644
Query 116354 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT 116413
|||| |||| |||| || || ||||| | | ||||| | || | | | |
Sbjct 149645 GAGTGAGCACCTGAGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGT 149704
Query 116414 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 116473
||| | || || || | || ||| || || || | | |||||| | | |
Sbjct 149705 CGACGAAAGCGGGTAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGG 149764
Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533
||||||| || || || || || | || ||||| || || ||||||||||| || |
Sbjct 149765 TGTACTCAATGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGT 149824
Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593
| ||| ||| || ||||||||||||||||||||||| | || ||||| || ||||
Sbjct 149825 TGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGG 149884
Query 116594 ACTTGAGAATAGCCTTCCA 116612
||| || || || | |||
Sbjct 149885 ACTCTAGGATTGCATACCA 149903
>seq244
Length=165466
Score = 100 bits (110), Expect = 3e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| | |||||||||||| |||||||| ||||| |||||| ||||||
Sbjct 56306 GCAAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCT 56365
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| || |||||||| | |||||| || | ||| | || |||||||||
Sbjct 56366 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATA 56425
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
||||| || || || || | |||||| | ||||||
Sbjct 56426 CCCTCAACGGCGGCAAAGGCGATAAGACGCGTGCCAAAGG 56465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613503940743000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |