Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq164 141 1e-28 seq244 100 3e-16 >seq164 Length=316633 Score = 141 bits (156), Expect = 1e-28 Identities = 701/1099 (64%), Gaps = 24/1099 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||| ||||| ||| | | ||| | | ||| |||||||||| || |||||||| | Sbjct 148817 TGAATTGAATTGGTGCAGACGCCGCCATGGTTCGAAGGTAGTACAAGCCAGTCTTGAGAC 148876 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | ||||||| || | ||||| || | | ||| | || || | |||| Sbjct 148877 CAAGCTTCCACCCAGCGAAGTGCATGGATGTAATCTTACCCATGGTAGGCTCCTTCATGT 148936 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | |||||| ||||||||||| ||| ||||| || ||||| | | || Sbjct 148937 GGATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGA-CA 148995 Query 115706 CATCCTTCATCT-TGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGA 115762 || ||| ||| ||| ||||||| || || ||||||| ||| || ||||| |||| Sbjct 148996 -ATGGTTC-TCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGA 149053 Query 115763 TATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCT 115819 | | || | || ||||| || ||| | || | |||| | | |||||| | | Sbjct 149054 TGTTGGGAATCCTCTGAATAGAACCGCCTTC--TG-CAATGATTCGGTTCTTCATGTTGT 149110 Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879 ||||| ||||| || | || |||| || || ||| ||||| |||| Sbjct 149111 CCGACCACAGACCCATATCTACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACT 149170 Query 115880 CACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938 |||| || | | || | ||| || ||||| | || ||||||||||||||||| ||| Sbjct 149171 CACCGGCCAAGACACGGCG-AGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTG 149229 Query 115939 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGG 115998 || || | || || | ||||| || || ||||| || || | || || ||| || Sbjct 149230 TTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGC 149289 Query 115999 AGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCT 116056 | ||| | |||| |||| | | |||||||| | | | || | | Sbjct 149290 ACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAG--TAGGGG 149347 Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116 | | |||||| || | || | ||||||||||||| | || || || || | || Sbjct 149348 TGACGTTCCACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGG 149407 Query 116117 CATATGGGCCCTCAACCTCCGCC--AAT-TCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 |||| || || || |||| ||| ||| || || |||||| || || || | Sbjct 149408 CATAAGGACC---AAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAA 149464 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC 116233 | || ||||| || ||| || | | | ||||| |||||||| | | ||| Sbjct 149465 TGGTTTCAAAGATCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGA 149524 Query 116234 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 116293 || ||| |||| ||||||||||||||||||||||| || || || || || | || Sbjct 149525 GGGCAAGGAATGCATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAAT 149584 Query 116294 TAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 116353 | || || || ||||| || ||| ||||| | | ||||| || Sbjct 149585 TGCTGCGGCGTGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGC 149644 Query 116354 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT 116413 |||| |||| |||| || || ||||| | | ||||| | || | | | | Sbjct 149645 GAGTGAGCACCTGAGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGT 149704 Query 116414 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 116473 ||| | || || || | || ||| || || || | | |||||| | | | Sbjct 149705 CGACGAAAGCGGGTAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGG 149764 Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 ||||||| || || || || || | || ||||| || || ||||||||||| || | Sbjct 149765 TGTACTCAATGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGT 149824 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | ||| ||| || ||||||||||||||||||||||| | || ||||| || |||| Sbjct 149825 TGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGG 149884 Query 116594 ACTTGAGAATAGCCTTCCA 116612 ||| || || || | ||| Sbjct 149885 ACTCTAGGATTGCATACCA 149903 >seq244 Length=165466 Score = 100 bits (110), Expect = 3e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||||||| |||||||| ||||| |||||| |||||| Sbjct 56306 GCAAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCT 56365 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | ||| | || ||||||||| Sbjct 56366 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATA 56425 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| || || || || | |||||| | |||||| Sbjct 56426 CCCTCAACGGCGGCAAAGGCGATAAGACGCGTGCCAAAGG 56465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503940743000