Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9 141 2e-28 seq151 93.3 1e-13 seq382 87.8 4e-12 >seq9 Length=355999 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| ||||||||||||| ||||||||| | || ||| Sbjct 44954 CGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTT 45013 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||||||||| ||||| | ||||||||| ||||| || || Sbjct 45014 CGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCC 45073 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||||||||||| || ||| |||| ||| || | || || || || | Sbjct 45074 TCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGA 45133 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 45134 GTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTG 45171 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || ||||| |||| ||||||||| | | || | ||||| Sbjct 44735 AGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCC 44794 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| ||||||||||| ||||| || || || || || Sbjct 44795 TCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCT 44854 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| |||||||| | || || || | ||||| ||| Sbjct 44855 TGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTC 44914 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || ||||| || Sbjct 44915 TTGCCAGTCAGAGTCTTAACGAAAATCTG 44943 >seq151 Length=370960 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| ||||||||||||| ||||||||| | | || | || || Sbjct 220888 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 220947 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||| || ||||| || ||||| Sbjct 220948 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGG 220988 >seq382 Length=167612 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || |||||||| |||| ||||||||| | | || | || || Sbjct 145465 AGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 145406 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || ||||||||||| || |||||||||||||||||||| || Sbjct 145405 TCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGG 145365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915180403475