Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 116 4e-21 seq151 105 8e-18 seq382 89.7 6e-13 seq176 82.4 9e-11 >seq9 Length=355999 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| |||| |||||||||||||| ||||| Sbjct 45495 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAG 45554 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||| ||||| | || | || |||||||||| ||| || ||| | | Sbjct 45555 ATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTG 45614 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || || || |||| |||||||| || ||||| Sbjct 45615 TCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTTCCCGT 45661 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || |||||||||||| |||||||| || ||||| || | Sbjct 44959 ACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCC 45018 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| ||||| || ||||| |||||||| || | ||| | | ||| || Sbjct 45019 ATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTT 45078 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| | || ||| | | | || || || || || || | |||| Sbjct 45079 GTCCTGAATCTT-TGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGA 45137 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || || ||||||||||| Sbjct 45138 TGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || | || || |||||||| || ||||| Sbjct 44756 TCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAA 44815 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | | |||||| || ||||||| |||| ||| Sbjct 44816 ATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTCGATTTGA-CGTT 44874 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | ||||| || ||||| ||||| || ||||| Sbjct 44875 GTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAAC 44934 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 44935 GAAAATCTGCAT 44946 >seq151 Length=370960 Score = 105 bits (116), Expect = 8e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || || || |||| |||||||||||||||||||| Sbjct 220908 CTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 220967 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||| || || | || | || ||||||||| |||||| ||||| Sbjct 220968 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGA 221023 >seq382 Length=167612 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| |||||| ||||| ||||||||||| || ||||| |||| || Sbjct 145463 CACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 145404 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||||||| || || || || | ||||||||||| | || | || ||||||||| Sbjct 145403 AAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 145347 >seq176 Length=447728 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 ||||||||| ||||| ||||| | |||||||||||| | || ||||||||||| || Sbjct 44140 GTACTCTCCGCCTGGATGTTGTATTTGGATAGAGTGCGTCCTTCCTCGAGCTGCTTCCCA 44081 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| || | || ||||| ||||| || | || |||| | ||| |||||| Sbjct 44080 CCGAAGATGAGACGTTGCTGATCGGCGGGTATGCCCTCCATATCCTGGATCTT 44028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235397171000