Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq9 116 4e-21
seq151 105 8e-18
seq382 89.7 6e-13
seq176 82.4 9e-11
>seq9
Length=355999
Score = 116 bits (128), Expect = 4e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || ||||| |||| |||||||||||||| |||||
Sbjct 45495 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAG 45554
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||||||||| ||||| | || | || |||||||||| ||| || ||| | |
Sbjct 45555 ATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTG 45614
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | |||||| || || || |||| |||||||| || |||||
Sbjct 45615 TCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTTCCCGT 45661
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| |||| || |||||||||||| |||||||| || ||||| || |
Sbjct 44959 ACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCC 45018
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| ||||||||||| ||||| || ||||| |||||||| || | ||| | | ||| ||
Sbjct 45019 ATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTT 45078
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| | || ||| | | | || || || || || || | ||||
Sbjct 45079 GTCCTGAATCTT-TGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGA 45137
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| || || || || || |||||||||||
Sbjct 45138 TGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 91.5 bits (100), Expect = 2e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || || || | || || |||||||| || |||||
Sbjct 44756 TCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAA 44815
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||| ||||| | || | | |||||| || ||||||| |||| |||
Sbjct 44816 ATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTTCGATTTGA-CGTT 44874
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || || || || | ||||| || ||||| ||||| || |||||
Sbjct 44875 GTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAAC 44934
Query 46582 AAAGATTTGCAT 46593
|| || |||||
Sbjct 44935 GAAAATCTGCAT 44946
>seq151
Length=370960
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||||||||| ||||||||||| || || || |||| ||||||||||||||||||||
Sbjct 220908 CTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 220967
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||| || || | || | || ||||||||| |||||| |||||
Sbjct 220968 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTTGGACTTGA 221023
>seq382
Length=167612
Score = 89.7 bits (98), Expect = 6e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| ||||| | ||| |||||| ||||| ||||||||||| || ||||| |||| ||
Sbjct 145463 CACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 145404
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||||||| || || || || | ||||||||||| | || | || |||||||||
Sbjct 145403 AAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 145347
>seq176
Length=447728
Score = 82.4 bits (90), Expect = 9e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456
||||||||| ||||| ||||| | |||||||||||| | || ||||||||||| ||
Sbjct 44140 GTACTCTCCGCCTGGATGTTGTATTTGGATAGAGTGCGTCCTTCCTCGAGCTGCTTCCCA 44081
Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|||| || | || ||||| ||||| || | || |||| | ||| ||||||
Sbjct 44080 CCGAAGATGAGACGTTGCTGATCGGCGGGTATGCCCTCCATATCCTGGATCTT 44028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235397171000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |