Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq244 176 5e-39 seq9 129 6e-25 seq151 114 1e-20 seq382 98.7 1e-15 >seq244 Length=165466 Score = 176 bits (194), Expect = 5e-39 Identities = 205/276 (74%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||| ||| | || ||||| | ||||||||| ||| ||||| Sbjct 56627 GTATGTGTCGATGAGAAGCGAGTACGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAA 56686 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| ||||||||| || || ||||| ||| |||||||||| ||| Sbjct 56687 GCCGTAGAAGCAACGCGCCTCGGGGACTTGTACTTCGCCGCTGAATCGCTCGACCAAATT 56746 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||| ||| |||||||| ||||| || ||||| |||||| ||| Sbjct 56747 CTCGTTGACAATGCCATCGGATGCGGCGAAGAAGGCAAGGACGTGGGAGATGAAGAAGCG 56806 Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||| ||||| ||| | ||||||| | || ||||| || || | |||||| Sbjct 56807 CTCGTCGTCATTCAATCGCTTGTTCCAGTCGTGGAGATCTTTGGAGAGATCAATCTCCTC 56866 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || || || || |||||||| Sbjct 56867 AGCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACAT 56902 Score = 122 bits (134), Expect = 9e-23 Identities = 319/479 (67%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || ||| ||| ||| ||| | |||||| || ||||| ||| Sbjct 56033 TTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATAAAGTCAAAGGGATTG 56092 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | ||||||| |||| || | ||| | | |||||| | |||||| || ||||| Sbjct 56093 GTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAGACGGTCGGCAACAAACTCA 56152 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | | ||| | | | || ||||| |||| |||| | |||| Sbjct 56153 ATGTACTGGCACATGAGGGTGGCATTCATG-CCGAGCAGTGCGCAT-GGCAAAGACTCGG 56210 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | || ||||| |||| ||| || || |||| ||| || || | | || Sbjct 56211 ACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCTTGCACAGCCTGCTTGC 56270 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 | || || | | || || | | ||| |||||||| |||| ||||||| Sbjct 56271 TTGGGCGCGACTTGAGGTGGGAAAAGAGGAGGCAGGCAAAGTCAGTGTGCATACCCTCGT 56330 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | || ||||| || ||| ||| || | || ||||||||||| || || ||||||| Sbjct 56331 CACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTGAGCC 56390 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| || || || ||||||| ||||| ||||| || || || | | Sbjct 56391 AGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCAAAGGCGATAA 56450 Query 133043 GGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | ||| ||| || |||| ||||| | | |||||| || || ||||| |||||||| Sbjct 56451 GACGCGTGCCAAAGGTGGAGTTCTTATC-CGTGATCCATCGAAGAGCCCAGTCGGCCTT 56508 >seq9 Length=355999 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| |||| || ||| | | Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | ||| || |||| || || ||||| || || | ||||| Sbjct 44886 GACACCATCGACAACG-TCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA 44828 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| || || ||||| || || | || || ||| ||||||||| Sbjct 44827 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAA 44768 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || || |||||||| ||| || | ||||| Sbjct 44767 CATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720 Score = 127 bits (140), Expect = 2e-24 Identities = 146/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 ||||| || ||||||||| | || |||||| || |||||| | | | || | ||||| Sbjct 45661 ACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATG--TAAAGT 45604 Query 38327 A-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 ||||||| ||||| ||||| |||||| | ||||||||||| | || | ||| |||| Sbjct 45603 CCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCA 45544 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| |||||||| ||||||||||||||| |||||| | || || | Sbjct 45543 AGCAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTAC 45484 Query 38446 ATTTGGTGCTGCG 38458 || | || || || Sbjct 45483 ATCTCGTCCTCCG 45471 Score = 118 bits (130), Expect = 1e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| | || |||||| | | Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 || | | | | |||| | ||| ||| || | ||||||||||| || ||||||| | | Sbjct 45114 GATACCATCGACAACG-TAAAATCAAAGATTCAGGACAAAGAGGGTAT-CCCGCCGGATC 45057 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || || || ||||| || || | || || || ||||||| Sbjct 45056 AGCAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACA 44997 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || ||||| |||||||||||| Sbjct 44996 ACATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCGT 44959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| ||||||||| |||| ||||| || | || | | | | | | || | Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||| | ||||| ||||| ||||| | ||||||||||| | || | ||| || || Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || ||||| || | |||||| | ||||||||||||||| |||||| | || || ||| Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 45198 CTTGTCCTCCGT 45187 >seq151 Length=370960 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | || |||||||| || || | ||| ||||| Sbjct 221015 AAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAG 220956 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| || |||||| ||||||||||||||||||||| | || || || Sbjct 220955 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 220896 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| || | ||||| Sbjct 220895 TTGGTCCTTCGTCTGCGTGGCGG 220873 >seq382 Length=167612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | || || || ||||| || Sbjct 145347 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 145406 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| ||||||||||||||| ||||| | || || ||| | ||||| Sbjct 145407 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTC 145466 Query 38457 CG 38458 || Sbjct 145467 CG 145468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170142832000