Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq244 176 5e-39
seq9 129 6e-25
seq151 114 1e-20
seq382 98.7 1e-15
>seq244
Length=165466
Score = 176 bits (194), Expect = 5e-39
Identities = 205/276 (74%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| ||| ||| | || ||||| | ||||||||| ||| |||||
Sbjct 56627 GTATGTGTCGATGAGAAGCGAGTACGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAA 56686
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
|||||| ||||| ||||||||| || || ||||| ||| |||||||||| |||
Sbjct 56687 GCCGTAGAAGCAACGCGCCTCGGGGACTTGTACTTCGCCGCTGAATCGCTCGACCAAATT 56746
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| ||||| ||| |||||||| ||||| || ||||| |||||| |||
Sbjct 56747 CTCGTTGACAATGCCATCGGATGCGGCGAAGAAGGCAAGGACGTGGGAGATGAAGAAGCG 56806
Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| ||| ||||| ||| | ||||||| | || ||||| || || | ||||||
Sbjct 56807 CTCGTCGTCATTCAATCGCTTGTTCCAGTCGTGGAGATCTTTGGAGAGATCAATCTCCTC 56866
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || || || || || ||||||||
Sbjct 56867 AGCAGTCCAGAAAGAAGCTTCAGCCTTCTTGTACAT 56902
Score = 122 bits (134), Expect = 9e-23
Identities = 319/479 (67%), Gaps = 6/479 (1%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || ||| ||| ||| ||| | |||||| || ||||| |||
Sbjct 56033 TTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATAAAGTCAAAGGGATTG 56092
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | ||||||| |||| || | ||| | | |||||| | |||||| || |||||
Sbjct 56093 GTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAGACGGTCGGCAACAAACTCA 56152
Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGG 132802
||||| || ||||| | | ||| | | | || ||||| |||| |||| | ||||
Sbjct 56153 ATGTACTGGCACATGAGGGTGGCATTCATG-CCGAGCAGTGCGCAT-GGCAAAGACTCGG 56210
Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862
| || ||||| |||| ||| || || |||| ||| || || | | ||
Sbjct 56211 ACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCTTGCACAGCCTGCTTGC 56270
Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922
| || || | | || || | | ||| |||||||| |||| |||||||
Sbjct 56271 TTGGGCGCGACTTGAGGTGGGAAAAGAGGAGGCAGGCAAAGTCAGTGTGCATACCCTCGT 56330
Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982
| | || ||||| || ||| ||| || | || ||||||||||| || || |||||||
Sbjct 56331 CACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCCACGCTTCTTGAGCC 56390
Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042
| || |||| || || || ||||||| ||||| ||||| || || || | |
Sbjct 56391 AGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCAAAGGCGATAA 56450
Query 133043 GGCGCTCGCCGAACGTGG-CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
| ||| ||| || |||| ||||| | | |||||| || || ||||| ||||||||
Sbjct 56451 GACGCGTGCCAAAGGTGGAGTTCTTATC-CGTGATCCATCGAAGAGCCCAGTCGGCCTT 56508
>seq9
Length=355999
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| || ||||| |||| || ||| | |
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | ||| || |||| || || ||||| || || | |||||
Sbjct 44886 GACACCATCGACAACG-TCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA 44828
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||||| ||| || || ||||| || || | || || ||| |||||||||
Sbjct 44827 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAA 44768
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| |||||| | || || || |||||||| ||| || | |||||
Sbjct 44767 CATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720
Score = 127 bits (140), Expect = 2e-24
Identities = 146/193 (76%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
||||| || ||||||||| | || |||||| || |||||| | | | || | |||||
Sbjct 45661 ACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATG--TAAAGT 45604
Query 38327 A-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
||||||| ||||| ||||| |||||| | ||||||||||| | || | ||| ||||
Sbjct 45603 CCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCA 45544
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| |||||||| ||||||||||||||| |||||| | || || |
Sbjct 45543 AGCAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTAC 45484
Query 38446 ATTTGGTGCTGCG 38458
|| | || || ||
Sbjct 45483 ATCTCGTCCTCCG 45471
Score = 118 bits (130), Expect = 1e-21
Identities = 160/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| |||||||| | || |||||| | |
Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361
|| | | | | |||| | ||| ||| || | ||||||||||| || ||||||| | |
Sbjct 45114 GATACCATCGACAACG-TAAAATCAAAGATTCAGGACAAAGAGGGTAT-CCCGCCGGATC 45057
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | || || || ||||| || || | || || || |||||||
Sbjct 45056 AGCAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACA 44997
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||||||| | || ||||| ||||||||||||
Sbjct 44996 ACATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCGT 44959
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| ||||| ||||||||| |||| ||||| || | || | | | | | | || |
Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
||||| | ||||| ||||| ||||| | ||||||||||| | || | ||| || ||
Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| ||||| || | |||||| | ||||||||||||||| |||||| | || || |||
Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199
Query 38448 TTGGTGCTGCGT 38459
| || || |||
Sbjct 45198 CTTGTCCTCCGT 45187
>seq151
Length=370960
Score = 114 bits (126), Expect = 1e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | || |||||||| || || | ||| |||||
Sbjct 221015 AAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAG 220956
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| || |||||| ||||||||||||||||||||| | || || ||
Sbjct 220955 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 220896
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || ||| || | |||||
Sbjct 220895 TTGGTCCTTCGTCTGCGTGGCGG 220873
>seq382
Length=167612
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| ||||| | || || || ||||| ||
Sbjct 145347 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 145406
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||||||| ||||||||||||||| ||||| | || || ||| | |||||
Sbjct 145407 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTC 145466
Query 38457 CG 38458
||
Sbjct 145467 CG 145468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170142832000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |