Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq9 239 6e-58
seq29 127 3e-24
seq193 109 7e-19
seq164 105 8e-18
>seq9
Length=355999
Score = 239 bits (264), Expect = 6e-58
Identities = 504/746 (68%), Gaps = 8/746 (1%)
Strand=Plus/Minus
Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463
||||||| || || ||||| || || | || ||| || | |||| ||||| |
Sbjct 270299 CTTTCTTGTGCTTGCGTTTGAATTCATTAGTGAAATGATTCACAAGTCGATTGTCGAAGT 270240
Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523
|||| ||||||| |||||||| || || |||| |||||| || ||||| || | || |
Sbjct 270239 CTTCTCCACCCAGATGTGTATCGCCAGCAGTCGATTTGACCTCGAAGATGCCCTCCTCGA 270180
Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583
| | | | || ||||| || ||||||||||| || || || || | ||||| |
Sbjct 270179 TTGTGAGGAGGGAGACATCGAAGGTACCACCACCAAGATCGAAGATCAAGACGTTGCGCT 270120
Query 7584 CGTC-GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
|| | ||| | ||||| || ||||| || || || || || || || || || || ||
Sbjct 270119 CGCCAGTC-ATCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCAGTGGGCTCGTTGATG 270061
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
|| || || ||||| ||||| || | ||||| || || ||||| || || ||
Sbjct 270060 ATTCGGAGCACGTTCAAACCAGCGATGAGACCGGCATCCTTGGTGGCTTGACGCTGAGAG 270001
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| |||||||| ||||| || ||||| |||| | || | ||| || || ||
Sbjct 270000 TCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTAACGGTGCCACCAAGGTATGAC 269941
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | || |||| |||||||| ||||| || || ||||| || | | ||
Sbjct 269940 TCTGCAGTCTCCCTCATCTTGGTAAGGACCATAGAGGAGATCTCCTCGGGTGTGAAAGTC 269881
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882
||| || || || || || || || || | || || ||| || ||| |||
Sbjct 269880 TTCTGCTCGCCCTTGAACTCGACCTCGATGACAGGCTT-GCCG--GCCTTCTCGATGACC 269824
Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942
|| | | | | ||||||||| | ||||||| ||| | ||||| | |||||
Sbjct 269823 TTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCAGCGTCGGCGAACTTGCGACCGATG 269764
Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002
|||||||| ||||| || || ||||| ||||||||||| |||||||| || | |
Sbjct 269763 AGACGCTTAGCATCGAAGACAGTGTTGGCTGGGTTCATGGCGACCTGGTTCTTTGCGGAG 269704
Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062
|| ||||| ||||| || || || || || || ||| | || || || || || ||
Sbjct 269703 TCTCCGATGAGACGCTCGGTA---TCGGTGAAGGCAACGAAAGAGGGCGTGGTGCGGTTG 269647
Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122
|| |||||||| ||||| ||||| | || || | | ||| || ||||| || ||
Sbjct 269646 CCCTGGTCGTTGGCAATGATTTCGATACGATCATCACGGAAGATACCCACGCAGGAGTAG 269587
Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148
|| ||||| | ||| ||||| || ||
Sbjct 269586 GTAGTTCCGAGATCGATACCAATAGC 269561
Score = 199 bits (220), Expect = 5e-46
Identities = 500/758 (66%), Gaps = 9/758 (1%)
Strand=Plus/Minus
Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694
||||| ||||| || || ||||| | || ||||| | |||| || |||
Sbjct 271406 CCCTTGTCATTGGTGATGACGATCTTGTTGGTCTTACCGGTACCCTTCTCGAGAGCGGAG 271347
Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754
|| |||| ||||| || ||||| | |||||| | || | ||| || || ||| |
Sbjct 271346 ACGTTCATGATACCGTTGGCATCCATATCGAAGGTGACCTCAATCTGAGGAACACCACGG 271287
Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814
||||| | || ||||| || | || || | || | || |||| ||| | | | |
Sbjct 271286 GGTGCAGGCGGGATACCAGTAAGCTCGAACTTGCCCATCAAGTTGTTGTCCTTGGTCCTA 271227
Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874
||| || || || ||||||| || ||| |||| || || || || |||
Sbjct 271226 GCACGCTCGCCCTCGTAGACTTGGATGAGCACACCAGGCTGGTTGTCGGAGAAAGTGGAG 271167
Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934
|||| | ||||| | |||||| || || || | | || | || ||||| | |
Sbjct 271166 AAGACCTCGGACTTCTTGGTTGGAATGGTGGTGTTGCGCTTGATGAGAGGAGTCATGACA 271107
Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGA 6994
||||| ||| |||| || || || ||||| | || |||||||| | | || |
Sbjct 271106 CCACCAGCAGTCTCGATACCCAGGGAAAGAGGAGCGACATCCAAGAGCAGGATCTCGTTG 271047
Query 6995 ACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051
|| | | | ||||| | |||||||| || ||||| | || ||||||||
Sbjct 271046 GTGGACTTGGAGGATGTGTCACCAGACAAGATGGCAGCCTGGACAGCAGCTCCGTATGCA 270987
Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC 7111
|| ||||| || ||||| || | || || | || || || || || | || || | |
Sbjct 270986 ACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGAAGTCGGAGACC 270927
Query 7112 ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTC 7171
|| | ||||| || || || || || |||||||||||||| ||||| || | ||
Sbjct 270926 ATCTTCTGAATCTTGGGAATACGGGTAGATCCACCGACCAAGACGATCTCGTGGACGGAA 270867
Query 7172 GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT---ACATTTACGG 7228
|| || |||||||| | || || || || || |||||||| | || |||
Sbjct 270866 GACTTGTCGATCTTAGCATCACGGAGGACGCGCTCAACTGGTTCCATGGTAGAT---CGG 270810
Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288
|| | |||| |||| ||||||||||| || ||||| || || ||||||||||||| |
Sbjct 270809 AAAAGGTCCTGGCACAACTCCTCAAAACGGGCGCGGGTGATTGAGGTATAGAAATCAATG 270750
Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348
|| ||| ||| || || || ||||||| |||||| || | |||||| | ||||||||
Sbjct 270749 CCTTCGAATAGTGAGTCGATCTCAATGGATGTTTGCGCGGACGAAGAGAGTGTTCGCTTC 270690
Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386
|| ||||| || || || || | || || || |||||
Sbjct 270689 GCTCGCTCGCATGCGGTACGGAGTCGGCGGAGAGCACG 270652
>seq29
Length=72666
Score = 127 bits (140), Expect = 3e-24
Identities = 361/562 (64%), Gaps = 56/562 (10%)
Strand=Plus/Minus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||||||||| |||||||||||| | | |||||| ||||||| | | ||||||
Sbjct 38103 TCCTCAAAACGAGCACGGGTAATGTTGGAGTTGAAATCCTCGCCGTCAAAAAGCGAATCG 38044
Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364
||||| | || || || | ||| | ||| |||||||| || ||||| || || |
Sbjct 38043 ATTTCGACAGTGGTCTGGGTTGCGTTGGAGAGG--GTTCGCTTGGCACGCTCGCAGGCGG 37986
Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT-TA 7423
||| | |||||| |||||||| | || ||||| | || ||||| || | | | ||
Sbjct 37985 TTCTAAGACGACGGAGGGCACGAGCGTCTCCGGACAAGTCCTTCTTG-GTCTTCTTCGTA 37927
Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483
|| |||| ||| || ||| || ||| |||||| |||| || |||||||| |||
Sbjct 37926 AATTCTTTCTTGAAATGATCAAGTAGATTCGTATCGAAGTCTTGGCCTCCCAAGTGAGTA 37867
Query 7484 -----------------------------------------------TCCCCCGCGGTCG 7496
|| || || || |
Sbjct 37866 CTTTGGTGCGTTAGTTTTTATTCCGTTATCAGGACTTGGTAGCTTACTCTCCAGCAGTGG 37807
Query 7497 CTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCAC 7556
|||| || || | ||| |||| |||| || | || |||||||| |||||||| |
Sbjct 37806 CTTTTACAGTGAAAACACCACCTTGGATGTGCAAAAGGGACACATCAAAGGTACCACCGC 37747
Query 7557 CCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTTATCGA-GACCGTACG 7613
||| |||| | ||||| || ||| | || | || || || ||| | |||| || |
Sbjct 37746 CCAAGTCATAGATGAGGACATTCCTCTCCTTCTCAGACTTTCCTGATCCAAGACCATATG 37687
Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673
|||| || || || || || || || || ||||| ||| ||| ||||||||||| |
Sbjct 37686 CGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGCAC 37627
Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCG 7733
| ||||| || || ||||||| || ||||| |||||||| || || || | ||| |
Sbjct 37626 CGGCATCCTTGGTGGCTTGTCTCTGGTTGTCGTTGAAGTAGGCTGGAACTGTGATGACAG 37567
Query 7734 CGTCCGTGACTTTCTTACCGAG 7755
| | | ||| ||||| |||||
Sbjct 37566 CCTTCTCGACCTTCTTGCCGAG 37545
>seq193
Length=432486
Score = 109 bits (120), Expect = 7e-19
Identities = 221/327 (68%), Gaps = 6/327 (2%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||| || || ||||| | ||||| || || ||| | |||||||| |||| ||
Sbjct 54481 ATCGAAGTCCTCGCCACCAAGATGTGTGTCGCCGTTGGTGGACTTGACTTCGAAGACGCC 54540
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
|| || | | | || | ||| || ||||||||||| || || | | |
Sbjct 54541 GTTTTGGATTTCGAGGATGGAGATATCGAAAGTACCACCACCAAGATCGTAGACAGCAAT 54600
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
| | | ||||| || ||||||||||||||| |||| ||| || || || || ||
Sbjct 54601 GATGCTGTCGTC-----TGA-CTTATCGAGACCGTAGGCGAGAGCAGCAGCAGTGGGCTC 54654
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || | ||| ||| ||| || ||||| || | ||||| || || ||||| ||
Sbjct 54655 GTTGATCACACGGAGAACGTTGAGACCAGCGATCTGACCAGCATCCTTGGTGGCTTGACG 54714
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| |||||||| |||||||||||||| || || || |||| | | || ||||| | |
Sbjct 54715 CTGGGAATCGTTGAAGTAGGCCGGGACGGTGACAACGGCGTTCTTAACGTTCTTGCTCAT 54774
Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782
|| | ||| || | || ||||| ||
Sbjct 54775 GTATGCTTCGGCAGTCTCCTTCATCTT 54801
>seq164
Length=316633
Score = 105 bits (116), Expect = 8e-18
Identities = 337/522 (65%), Gaps = 3/522 (1%)
Strand=Plus/Plus
Query 105474 GTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACA 105533
||| || || |||||||| | ||| || ||||| | || || || | | || ||
Sbjct 150007 GTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCA 150066
Query 105534 AAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACAT 105593
|||| | ||| | || | || || || ||||||||||| || || ||||| |
Sbjct 150067 GAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAG 150126
Query 105594 GGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAG 105653
|| | || | ||| ||| | ||||||| | ||| ||||| | | || ||
Sbjct 150127 TGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAG 150186
Query 105654 AAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACG--- 105710
|| ||| || |||||||||||||| || | ||||| || | | || |||
Sbjct 150187 GAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTT 150246
Query 105711 ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAAT 105770
| ||| | |||| ||| |||| ||| || ||| || || || | ||| || || |
Sbjct 150247 ATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAG 150306
Query 105771 ACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAAC 105830
||||| ||| || ||||| ||||| | ||||| || | | || || | | || ||
Sbjct 150307 ACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCAC 150366
Query 105831 GTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTA 105890
| | |||||||| ||||| ||| || ||||| || | || || ||
Sbjct 150367 ATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATA 150426
Query 105891 AATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCT 105950
||||| || || ||||| ||||| | | || ||||| || || ||||||||||||
Sbjct 150427 GATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGA 150486
Query 105951 GGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992
|| || || || ||||| || || || | ||||| ||||
Sbjct 150487 CGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA 150528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635129425857000
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