Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq9 239 6e-58 seq29 127 3e-24 seq193 109 7e-19 seq164 105 8e-18 >seq9 Length=355999 Score = 239 bits (264), Expect = 6e-58 Identities = 504/746 (68%), Gaps = 8/746 (1%) Strand=Plus/Minus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 ||||||| || || ||||| || || | || ||| || | |||| ||||| | Sbjct 270299 CTTTCTTGTGCTTGCGTTTGAATTCATTAGTGAAATGATTCACAAGTCGATTGTCGAAGT 270240 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 |||| ||||||| |||||||| || || |||| |||||| || ||||| || | || | Sbjct 270239 CTTCTCCACCCAGATGTGTATCGCCAGCAGTCGATTTGACCTCGAAGATGCCCTCCTCGA 270180 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 | | | | || ||||| || ||||||||||| || || || || | ||||| | Sbjct 270179 TTGTGAGGAGGGAGACATCGAAGGTACCACCACCAAGATCGAAGATCAAGACGTTGCGCT 270120 Query 7584 CGTC-GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | ||| | ||||| || ||||| || || || || || || || || || || || Sbjct 270119 CGCCAGTC-ATCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCAGTGGGCTCGTTGATG 270061 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 || || || ||||| ||||| || | ||||| || || ||||| || || || Sbjct 270060 ATTCGGAGCACGTTCAAACCAGCGATGAGACCGGCATCCTTGGTGGCTTGACGCTGAGAG 270001 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || ||||| |||| | || | ||| || || || Sbjct 270000 TCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTGTTAACGGTGCCACCAAGGTATGAC 269941 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || |||| |||||||| ||||| || || ||||| || | | || Sbjct 269940 TCTGCAGTCTCCCTCATCTTGGTAAGGACCATAGAGGAGATCTCCTCGGGTGTGAAAGTC 269881 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| || || || || || || || || | || || ||| || ||| ||| Sbjct 269880 TTCTGCTCGCCCTTGAACTCGACCTCGATGACAGGCTT-GCCG--GCCTTCTCGATGACC 269824 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 || | | | | ||||||||| | ||||||| ||| | ||||| | ||||| Sbjct 269823 TTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCAGCGTCGGCGAACTTGCGACCGATG 269764 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 |||||||| ||||| || || ||||| ||||||||||| |||||||| || | | Sbjct 269763 AGACGCTTAGCATCGAAGACAGTGTTGGCTGGGTTCATGGCGACCTGGTTCTTTGCGGAG 269704 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| ||||| || || || || || || ||| | || || || || || || Sbjct 269703 TCTCCGATGAGACGCTCGGTA---TCGGTGAAGGCAACGAAAGAGGGCGTGGTGCGGTTG 269647 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| ||||| ||||| | || || | | ||| || ||||| || || Sbjct 269646 CCCTGGTCGTTGGCAATGATTTCGATACGATCATCACGGAAGATACCCACGCAGGAGTAG 269587 Query 8123 GTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| | ||| ||||| || || Sbjct 269586 GTAGTTCCGAGATCGATACCAATAGC 269561 Score = 199 bits (220), Expect = 5e-46 Identities = 500/758 (66%), Gaps = 9/758 (1%) Strand=Plus/Minus Query 6635 CCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTT 6694 ||||| ||||| || || ||||| | || ||||| | |||| || ||| Sbjct 271406 CCCTTGTCATTGGTGATGACGATCTTGTTGGTCTTACCGGTACCCTTCTCGAGAGCGGAG 271347 Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| ||||| || ||||| | |||||| | || | ||| || || ||| | Sbjct 271346 ACGTTCATGATACCGTTGGCATCCATATCGAAGGTGACCTCAATCTGAGGAACACCACGG 271287 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 ||||| | || ||||| || | || || | || | || |||| ||| | | | | Sbjct 271286 GGTGCAGGCGGGATACCAGTAAGCTCGAACTTGCCCATCAAGTTGTTGTCCTTGGTCCTA 271227 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 ||| || || || ||||||| || ||| |||| || || || || ||| Sbjct 271226 GCACGCTCGCCCTCGTAGACTTGGATGAGCACACCAGGCTGGTTGTCGGAGAAAGTGGAG 271167 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 |||| | ||||| | |||||| || || || | | || | || ||||| | | Sbjct 271166 AAGACCTCGGACTTCTTGGTTGGAATGGTGGTGTTGCGCTTGATGAGAGGAGTCATGACA 271107 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGA 6994 ||||| ||| |||| || || || ||||| | || |||||||| | | || | Sbjct 271106 CCACCAGCAGTCTCGATACCCAGGGAAAGAGGAGCGACATCCAAGAGCAGGATCTCGTTG 271047 Query 6995 ACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 || | | | ||||| | |||||||| || ||||| | || |||||||| Sbjct 271046 GTGGACTTGGAGGATGTGTCACCAGACAAGATGGCAGCCTGGACAGCAGCTCCGTATGCA 270987 Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC 7111 || ||||| || ||||| || | || || | || || || || || | || || | | Sbjct 270986 ACAGCCTCGTCAGGGTTGATGGACTTGTTGGGCTCCTTGCCATTGAAGAAGTCGGAGACC 270927 Query 7112 ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTC 7171 || | ||||| || || || || || |||||||||||||| ||||| || | || Sbjct 270926 ATCTTCTGAATCTTGGGAATACGGGTAGATCCACCGACCAAGACGATCTCGTGGACGGAA 270867 Query 7172 GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT---ACATTTACGG 7228 || || |||||||| | || || || || || |||||||| | || ||| Sbjct 270866 GACTTGTCGATCTTAGCATCACGGAGGACGCGCTCAACTGGTTCCATGGTAGAT---CGG 270810 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 || | |||| |||| ||||||||||| || ||||| || || ||||||||||||| | Sbjct 270809 AAAAGGTCCTGGCACAACTCCTCAAAACGGGCGCGGGTGATTGAGGTATAGAAATCAATG 270750 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || ||| ||| || || || ||||||| |||||| || | |||||| | |||||||| Sbjct 270749 CCTTCGAATAGTGAGTCGATCTCAATGGATGTTTGCGCGGACGAAGAGAGTGTTCGCTTC 270690 Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || ||||| || || || || | || || || ||||| Sbjct 270689 GCTCGCTCGCATGCGGTACGGAGTCGGCGGAGAGCACG 270652 >seq29 Length=72666 Score = 127 bits (140), Expect = 3e-24 Identities = 361/562 (64%), Gaps = 56/562 (10%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||||||||| |||||||||||| | | |||||| ||||||| | | |||||| Sbjct 38103 TCCTCAAAACGAGCACGGGTAATGTTGGAGTTGAAATCCTCGCCGTCAAAAAGCGAATCG 38044 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 ||||| | || || || | ||| | ||| |||||||| || ||||| || || | Sbjct 38043 ATTTCGACAGTGGTCTGGGTTGCGTTGGAGAGG--GTTCGCTTGGCACGCTCGCAGGCGG 37986 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT-TA 7423 ||| | |||||| |||||||| | || ||||| | || ||||| || | | | || Sbjct 37985 TTCTAAGACGACGGAGGGCACGAGCGTCTCCGGACAAGTCCTTCTTG-GTCTTCTTCGTA 37927 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || |||| ||| || ||| || ||| |||||| |||| || |||||||| ||| Sbjct 37926 AATTCTTTCTTGAAATGATCAAGTAGATTCGTATCGAAGTCTTGGCCTCCCAAGTGAGTA 37867 Query 7484 -----------------------------------------------TCCCCCGCGGTCG 7496 || || || || | Sbjct 37866 CTTTGGTGCGTTAGTTTTTATTCCGTTATCAGGACTTGGTAGCTTACTCTCCAGCAGTGG 37807 Query 7497 CTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCAC 7556 |||| || || | ||| |||| |||| || | || |||||||| |||||||| | Sbjct 37806 CTTTTACAGTGAAAACACCACCTTGGATGTGCAAAAGGGACACATCAAAGGTACCACCGC 37747 Query 7557 CCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTTATCGA-GACCGTACG 7613 ||| |||| | ||||| || ||| | || | || || || ||| | |||| || | Sbjct 37746 CCAAGTCATAGATGAGGACATTCCTCTCCTTCTCAGACTTTCCTGATCCAAGACCATATG 37687 Query 7614 CGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG 7673 |||| || || || || || || || || ||||| ||| ||| ||||||||||| | Sbjct 37686 CGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGCAC 37627 Query 7674 CCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCG 7733 | ||||| || || ||||||| || ||||| |||||||| || || || | ||| | Sbjct 37626 CGGCATCCTTGGTGGCTTGTCTCTGGTTGTCGTTGAAGTAGGCTGGAACTGTGATGACAG 37567 Query 7734 CGTCCGTGACTTTCTTACCGAG 7755 | | | ||| ||||| ||||| Sbjct 37566 CCTTCTCGACCTTCTTGCCGAG 37545 >seq193 Length=432486 Score = 109 bits (120), Expect = 7e-19 Identities = 221/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | ||||| || || ||| | |||||||| |||| || Sbjct 54481 ATCGAAGTCCTCGCCACCAAGATGTGTGTCGCCGTTGGTGGACTTGACTTCGAAGACGCC 54540 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || || | | | || | ||| || ||||||||||| || || | | | Sbjct 54541 GTTTTGGATTTCGAGGATGGAGATATCGAAAGTACCACCACCAAGATCGTAGACAGCAAT 54600 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | | ||||| || ||||||||||||||| |||| ||| || || || || || Sbjct 54601 GATGCTGTCGTC-----TGA-CTTATCGAGACCGTAGGCGAGAGCAGCAGCAGTGGGCTC 54654 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || | ||| ||| ||| || ||||| || | ||||| || || ||||| || Sbjct 54655 GTTGATCACACGGAGAACGTTGAGACCAGCGATCTGACCAGCATCCTTGGTGGCTTGACG 54714 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || |||||||| |||||||||||||| || || || |||| | | || ||||| | | Sbjct 54715 CTGGGAATCGTTGAAGTAGGCCGGGACGGTGACAACGGCGTTCTTAACGTTCTTGCTCAT 54774 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || | ||| || | || ||||| || Sbjct 54775 GTATGCTTCGGCAGTCTCCTTCATCTT 54801 >seq164 Length=316633 Score = 105 bits (116), Expect = 8e-18 Identities = 337/522 (65%), Gaps = 3/522 (1%) Strand=Plus/Plus Query 105474 GTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACA 105533 ||| || || |||||||| | ||| || ||||| | || || || | | || || Sbjct 150007 GTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCA 150066 Query 105534 AAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACAT 105593 |||| | ||| | || | || || || ||||||||||| || || ||||| | Sbjct 150067 GAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAG 150126 Query 105594 GGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAG 105653 || | || | ||| ||| | ||||||| | ||| ||||| | | || || Sbjct 150127 TGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAG 150186 Query 105654 AAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACG--- 105710 || ||| || |||||||||||||| || | ||||| || | | || ||| Sbjct 150187 GAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTT 150246 Query 105711 ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAAT 105770 | ||| | |||| ||| |||| ||| || ||| || || || | ||| || || | Sbjct 150247 ATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAG 150306 Query 105771 ACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAAC 105830 ||||| ||| || ||||| ||||| | ||||| || | | || || | | || || Sbjct 150307 ACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCAC 150366 Query 105831 GTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTA 105890 | | |||||||| ||||| ||| || ||||| || | || || || Sbjct 150367 ATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATA 150426 Query 105891 AATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCT 105950 ||||| || || ||||| ||||| | | || ||||| || || |||||||||||| Sbjct 150427 GATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGA 150486 Query 105951 GGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 || || || || ||||| || || || | ||||| |||| Sbjct 150487 CGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA 150528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129425857000