Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq164 143 3e-29 seq244 122 1e-22 >seq164 Length=316633 Score = 143 bits (158), Expect = 3e-29 Identities = 897/1432 (63%), Gaps = 74/1432 (5%) Strand=Plus/Minus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| | ||||| || || | || || || || ||||| ||||| || | | |||| Sbjct 150614 ACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGA 150555 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 |||| || | ||||| |||| || || | || |||||||||||||| | Sbjct 150554 CATATAACTACATGTCAAACAAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAG 150495 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798 | || || ||| ||||||||| ||| ||||| || | | |||||| ||| || Sbjct 150494 GCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTG 150435 Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858 | || || || | ||| || | |||||| || || ||| ||||| ||||| | Sbjct 150434 AAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATTG 150375 Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAAT 111918 | || | | ||| | || | || | || |||| | || || |||||| | Sbjct 150374 GTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCT 150315 Query 111919 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAG 111978 | ||||| | || || ||||| ||||| | ||| ||| || || || || | || | Sbjct 150314 CCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAGG 150255 Query 111979 CTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 112035 |||| | || ||| | |||| ||||||| |||||||||||||| || | Sbjct 150254 GTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTT 150195 Query 112036 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTC 112094 | | |||||||| | | || || ||| | || |||| | |||| ||||| | Sbjct 150194 TCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGG-TCCGTGCTCGCGACTTG 150136 Query 112095 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 112154 |||| ||| || ||||| || || | ||||||||| | || | |||| ||| | ||| Sbjct 150135 TTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATGG 150076 Query 112155 TCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 112214 |||| || || || || | || || || ||| |||| | ||||| |||||||| Sbjct 150075 ACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGAG 150016 Query 112215 GCCCTCTA-CACAA---AGT---ACGAGGAAGAA------AGTCGGGCGACTG------- 112254 | ||||| ||||| ||| ||||| | || | || ||||| Sbjct 150015 GAACTCTACCACAAGTGAGTCAAACGAGTACAAACGTTTCACTCCAATGACTGACATTCC 149956 Query 112255 ------CGACGGTG-----------------CCAG---CTGCC--GATG-TGTGGAAAGC 112285 ||| ||| ||| |||| || | ||||| | || Sbjct 149955 CAGATACGAGCGTGAAGGCCGTGGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATGC 149896 Query 112286 TATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAA 112345 || || |||| || || |||||||| | ||||||||||| ||||| || || || || Sbjct 149895 AATCCTAGAGTCCCAGACTGAGACTGGAAACCCATATATGCTCTACAAGGATGCATGCAA 149836 Query 112346 CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAAT 112405 || ||||| || || ||||| ||||| ||| ||||| |||||||| || || || Sbjct 149835 CCGCAAGAGCAACCAGAAGAACTTGGGAACTATCCGCAGTTCTAACCTCTGCACTGAGAT 149776 Query 112406 CTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 112465 | | || | || | ||||||| || || || ||| | | || | ||||| || Sbjct 149775 CATTGAGTACACCGCTCCAGATGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTACC 149716 Query 112466 CAAGTATGTGG---ATC-CAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTA 112521 | | || | ||| | | | | || ||||| | || |||||||| || | Sbjct 149715 CGCTTTCGTCGACTATCATCGTGGCGA----ATATGATTTCCAGAAGCTCCACGAGGTCA 149660 Query 112522 CGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGA 112581 | | |||| |||||||||| | | || || |||| |||||||| || Sbjct 149659 CTCAGGTGCTCACTCGCAACCTAAACAAAATCATCGAAGTAAATCACTACCCCGTCGAAG 149600 Query 112582 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGG 112641 || || ||| | || ||||| || || || |||||||||||||||||||| | Sbjct 149599 AGGCACGCCGCAGCAATTTCAGGCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCTG 149540 Query 112642 ATGTATTCATTCTTTG---TCGCCACG-CATTTGATTCCGACGAAGCGAAGGAAATCAAT 112697 ||| ||||| ||| || || | | |||||||| || || | | | |||| Sbjct 149539 ATG----CATTCCTTGCCCTCCGCATGCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAAC 149484 Query 112698 GCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAG 112757 | | || ||||| || || || || || || || || | ||| | | || Sbjct 149483 ACTCAGATCTTTGAAACCATTTACCATGCTGCCCTCACTGCATCCTGCGAGATTTCTAAG 149424 Query 112758 GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTT 112817 | |||||| |||| |||| || |||||||| | || ||||| | | |||| Sbjct 149423 GAGCTTGGTCCTTATGCCACCTACGAAGGTTCTCCCGTGTCCCAAGGTATCTTGCAATAC 149364 Query 112818 GATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGACGCTCTCAAGGAACGCA 112875 || |||| |||| || | || | || || | |||||||| | | |||| || Sbjct 149363 GACATGT-GGAACGTCACCCCTA-CTGATCTTTGGGACTGGGATTCATTGAAGGCCAACA 149306 Query 112876 TCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCG 112935 | || | ||| | || ||| || | | || || |||||||| || |||||| Sbjct 149305 TTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGCCAACGGCTTCCACCT 149246 Query 112936 CACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | || || | || || || || |||||||| || || || | ||||| || Sbjct 149245 CTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAAACATTTA 149194 >seq244 Length=165466 Score = 122 bits (134), Expect = 1e-22 Identities = 119/151 (79%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTA 102240 ||| || |||| ||||| |||||||||||||||||| ||| |||| ||| | | Sbjct 56455 GCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCATCCA 56397 Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300 | | |||||||||||||| || ||||||||||||||| ||||||||| ||||| |||| Sbjct 56396 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCT 56337 Query 102301 CTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||||| | ||| || ||||| Sbjct 56336 CTCGTGACGAGGGTATGCACACTGACTTTGC 56306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739102306000