Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq164 143 3e-29
seq244 122 1e-22
>seq164
Length=316633
Score = 143 bits (158), Expect = 3e-29
Identities = 897/1432 (63%), Gaps = 74/1432 (5%)
Strand=Plus/Minus
Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678
||||| | ||||| || || | || || || || ||||| ||||| || | | ||||
Sbjct 150614 ACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGA 150555
Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738
|||| || | ||||| |||| || || | || |||||||||||||| |
Sbjct 150554 CATATAACTACATGTCAAACAAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAG 150495
Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798
| || || ||| ||||||||| ||| ||||| || | | |||||| ||| ||
Sbjct 150494 GCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTG 150435
Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858
| || || || | ||| || | |||||| || || ||| ||||| ||||| |
Sbjct 150434 AAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATTG 150375
Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAAT 111918
| || | | ||| | || | || | || |||| | || || |||||| |
Sbjct 150374 GTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCT 150315
Query 111919 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAG 111978
| ||||| | || || ||||| ||||| | ||| ||| || || || || | || |
Sbjct 150314 CCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAGG 150255
Query 111979 CTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 112035
|||| | || ||| | |||| ||||||| |||||||||||||| || |
Sbjct 150254 GTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTT 150195
Query 112036 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTC 112094
| | |||||||| | | || || ||| | || |||| | |||| ||||| |
Sbjct 150194 TCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGG-TCCGTGCTCGCGACTTG 150136
Query 112095 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 112154
|||| ||| || ||||| || || | ||||||||| | || | |||| ||| | |||
Sbjct 150135 TTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATGG 150076
Query 112155 TCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 112214
|||| || || || || | || || || ||| |||| | ||||| ||||||||
Sbjct 150075 ACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGAG 150016
Query 112215 GCCCTCTA-CACAA---AGT---ACGAGGAAGAA------AGTCGGGCGACTG------- 112254
| ||||| ||||| ||| ||||| | || | || |||||
Sbjct 150015 GAACTCTACCACAAGTGAGTCAAACGAGTACAAACGTTTCACTCCAATGACTGACATTCC 149956
Query 112255 ------CGACGGTG-----------------CCAG---CTGCC--GATG-TGTGGAAAGC 112285
||| ||| ||| |||| || | ||||| | ||
Sbjct 149955 CAGATACGAGCGTGAAGGCCGTGGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATGC 149896
Query 112286 TATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAA 112345
|| || |||| || || |||||||| | ||||||||||| ||||| || || || ||
Sbjct 149895 AATCCTAGAGTCCCAGACTGAGACTGGAAACCCATATATGCTCTACAAGGATGCATGCAA 149836
Query 112346 CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAAT 112405
|| ||||| || || ||||| ||||| ||| ||||| |||||||| || || ||
Sbjct 149835 CCGCAAGAGCAACCAGAAGAACTTGGGAACTATCCGCAGTTCTAACCTCTGCACTGAGAT 149776
Query 112406 CTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 112465
| | || | || | ||||||| || || || ||| | | || | ||||| ||
Sbjct 149775 CATTGAGTACACCGCTCCAGATGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTACC 149716
Query 112466 CAAGTATGTGG---ATC-CAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTA 112521
| | || | ||| | | | | || ||||| | || |||||||| || |
Sbjct 149715 CGCTTTCGTCGACTATCATCGTGGCGA----ATATGATTTCCAGAAGCTCCACGAGGTCA 149660
Query 112522 CGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGA 112581
| | |||| |||||||||| | | || || |||| |||||||| ||
Sbjct 149659 CTCAGGTGCTCACTCGCAACCTAAACAAAATCATCGAAGTAAATCACTACCCCGTCGAAG 149600
Query 112582 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGG 112641
|| || ||| | || ||||| || || || |||||||||||||||||||| |
Sbjct 149599 AGGCACGCCGCAGCAATTTCAGGCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCTG 149540
Query 112642 ATGTATTCATTCTTTG---TCGCCACG-CATTTGATTCCGACGAAGCGAAGGAAATCAAT 112697
||| ||||| ||| || || | | |||||||| || || | | | ||||
Sbjct 149539 ATG----CATTCCTTGCCCTCCGCATGCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAAC 149484
Query 112698 GCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAG 112757
| | || ||||| || || || || || || || || | ||| | | ||
Sbjct 149483 ACTCAGATCTTTGAAACCATTTACCATGCTGCCCTCACTGCATCCTGCGAGATTTCTAAG 149424
Query 112758 GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTT 112817
| |||||| |||| |||| || |||||||| | || ||||| | | ||||
Sbjct 149423 GAGCTTGGTCCTTATGCCACCTACGAAGGTTCTCCCGTGTCCCAAGGTATCTTGCAATAC 149364
Query 112818 GATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGACGCTCTCAAGGAACGCA 112875
|| |||| |||| || | || | || || | |||||||| | | |||| ||
Sbjct 149363 GACATGT-GGAACGTCACCCCTA-CTGATCTTTGGGACTGGGATTCATTGAAGGCCAACA 149306
Query 112876 TCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCG 112935
| || | ||| | || ||| || | | || || |||||||| || ||||||
Sbjct 149305 TTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGCCAACGGCTTCCACCT 149246
Query 112936 CACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987
| || || | || || || || |||||||| || || || | ||||| ||
Sbjct 149245 CTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAAACATTTA 149194
>seq244
Length=165466
Score = 122 bits (134), Expect = 1e-22
Identities = 119/151 (79%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 102182 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTA 102240
||| || |||| ||||| |||||||||||||||||| ||| |||| ||| | |
Sbjct 56455 GCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCATCCA 56397
Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300
| | |||||||||||||| || ||||||||||||||| ||||||||| ||||| ||||
Sbjct 56396 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCT 56337
Query 102301 CTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||||||||| | ||| || |||||
Sbjct 56336 CTCGTGACGAGGGTATGCACACTGACTTTGC 56306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620739102306000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |