Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq164 147 3e-30 >seq164 Length=316633 Score = 147 bits (162), Expect = 3e-30 Identities = 465/713 (65%), Gaps = 11/713 (2%) Strand=Plus/Plus Query 110516 ACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT 110575 ||||| ||| | |||||||| || | || || || || | || || || | || Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059 Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635 ||| ||||| || | ||| | || ||| | || | ||||||||||| ||| || | Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGA 150119 Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695 |||| | || |||| | ||| || ||| ||||||| | ||| || || | || Sbjct 150120 TCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTA 150179 Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCT 110755 | || | ||| | | | || | ||||||||| |||||||||| |||| || ||| Sbjct 150180 GATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCG 150239 Query 110756 TACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| | || |||| | || || ||||| ||| ||| |||| | |||||| | Sbjct 150240 GACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGG 150299 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 | || | |||| ||| |||||| || || | ||| ||| | | || || || Sbjct 150300 GGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATAC 150359 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGT 110931 || | || || ||||||||| || || ||| ||| |||| | ||| | || Sbjct 150360 GATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCT-TCAGG 150418 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 || |||| ||||| ||||| ||| ||||| || | || || |||||||| ||||| Sbjct 150419 GTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATT 150478 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG- 111050 || || || || || || |||||||| || || | ||||| ||| || ||| Sbjct 150479 TGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGA--AGTATTTGT 150536 Query 111051 -GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGG 111109 ||||| | ||| ||||| |||| ||||| | |||| |||||||| || | | Sbjct 150537 TTGACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAG 150596 Query 111110 CAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGT 111169 | || ||||| | ||| | |||||| ||| | ||| |||| | | | |||| Sbjct 150597 CTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGT 150656 Query 111170 A-ACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 | || | || |||||||||| ||| ||| | | | | ||||||||| || Sbjct 150657 ATGATCGT-TCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTC 150708 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 110280 GGGGAGAGCAATAGA-CGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 ||| ||||||| ||| | |||| ||||| || | ||| ||| ||||||| || | Sbjct 149715 GGGTAGAGCAAGAGAGCCCAAG-TTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAA 149773 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398 || || || || | ||| ||||| || |||||||||||||| || ||| Sbjct 149774 TGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGC 149833 Query 110399 AGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAA 110458 ||||||||||||||| |||||||| |||||| | ||||| || ||||| |||| || | Sbjct 149834 GGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGA 149893 Query 110459 TGGCCTTCCA 110468 | || | ||| Sbjct 149894 TTGCATACCA 149903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972871065000