Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq164 147 3e-30
>seq164
Length=316633
Score = 147 bits (162), Expect = 3e-30
Identities = 465/713 (65%), Gaps = 11/713 (2%)
Strand=Plus/Plus
Query 110516 ACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT 110575
||||| ||| | |||||||| || | || || || || | || || || | ||
Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059
Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635
||| ||||| || | ||| | || ||| | || | ||||||||||| ||| || |
Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGA 150119
Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695
|||| | || |||| | ||| || ||| ||||||| | ||| || || | ||
Sbjct 150120 TCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTA 150179
Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCT 110755
| || | ||| | | | || | ||||||||| |||||||||| |||| || |||
Sbjct 150180 GATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCG 150239
Query 110756 TACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812
||| | || |||| | || || ||||| ||| ||| |||| | |||||| |
Sbjct 150240 GACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGG 150299
Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872
| || | |||| ||| |||||| || || | ||| ||| | | || || ||
Sbjct 150300 GGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATAC 150359
Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGT 110931
|| | || || ||||||||| || || ||| ||| |||| | ||| | ||
Sbjct 150360 GATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCT-TCAGG 150418
Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991
|| |||| ||||| ||||| ||| ||||| || | || || |||||||| |||||
Sbjct 150419 GTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATT 150478
Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG- 111050
|| || || || || || |||||||| || || | ||||| ||| || |||
Sbjct 150479 TGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGA--AGTATTTGT 150536
Query 111051 -GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGG 111109
||||| | ||| ||||| |||| ||||| | |||| |||||||| || | |
Sbjct 150537 TTGACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAG 150596
Query 111110 CAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGT 111169
| || ||||| | ||| | |||||| ||| | ||| |||| | | | ||||
Sbjct 150597 CTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGT 150656
Query 111170 A-ACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221
| || | || |||||||||| ||| ||| | | | | ||||||||| ||
Sbjct 150657 ATGATCGT-TCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTC 150708
Score = 93.3 bits (102), Expect = 5e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 110280 GGGGAGAGCAATAGA-CGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338
||| ||||||| ||| | |||| ||||| || | ||| ||| ||||||| || |
Sbjct 149715 GGGTAGAGCAAGAGAGCCCAAG-TTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAA 149773
Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398
|| || || || | ||| ||||| || |||||||||||||| || |||
Sbjct 149774 TGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGC 149833
Query 110399 AGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAA 110458
||||||||||||||| |||||||| |||||| | ||||| || ||||| |||| || |
Sbjct 149834 GGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGA 149893
Query 110459 TGGCCTTCCA 110468
| || | |||
Sbjct 149894 TTGCATACCA 149903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588972871065000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |