Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq164 212 7e-50 seq244 91.5 2e-13 >seq164 Length=316633 Score = 212 bits (234), Expect = 7e-50 Identities = 915/1436 (64%), Gaps = 68/1436 (5%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | || || || |||||||| || || || || | || || | |||||| Sbjct 149194 TAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAA 149253 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTT---CCTTGATG-CG 106050 || |||||||| || || | | || ||| || | ||| | | | || || | Sbjct 149254 GCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCC 149313 Query 106051 TTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108 ||| ||| ||||||||| | | | || | || | || |||| |||| || || Sbjct 149314 TTCAATGA----ATCCCAGTCCCAAAGATCAG-TAGGGGTGACGTTCC-ACATGTCGTAT 149367 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | ||||||||| ||||||||| || | || |||| | ||| | | | | Sbjct 149368 TGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACCAAGCTCCTTA 149427 Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 | | || ||| || |||| || || || |||||||||||||| ||| || Sbjct 149428 GAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGATCTGAGTGTTG 149487 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288 | || | | || || |||||||| | |||| || ||| |||| |||||| Sbjct 149488 AGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGCATCAGCGAGA 149547 Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 106348 ||||| ||||| | || ||||||| ||| | | ||| || || || ||| Sbjct 149548 CCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGCGTGCCTCTTCGACG 149607 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 || || |||| || |||| | |||||| || || | | || |||| || Sbjct 149608 GGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTGAGTGACCTCG 149667 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 || || || | ||||| | || | | | | ||| | || || || | Sbjct 149668 TGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGAAAGCGGGTAGAGCAAGA 149727 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || |||| ||||| || || |||||| | | |||||||| | || || || || Sbjct 149728 GAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAATGATCTCAGTGCAG 149787 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 | ||| ||||| || || ||||| ||||| ||||| ||||| |||||| |||||| Sbjct 149788 AGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCATGCATCC 149847 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||||||||| || || | || ||||| ||||| |||| || ||||| | ||||| | Sbjct 149848 TTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGATTGCATACCACAGC 149907 Query 106648 ATCGGCGG-----CTGGTACA-----ATGGCGTTGGCCC--------------GTCCCTC 106683 || | | ||| | || | ||| || | | ||| || Sbjct 149908 TTCTGGGCACGAACTGTTTCACGCCCACGGCCTTCACGCTCGTATCTGGGAATGTCAGTC 149967 Query 106684 ------------CGC-----CTCGT---ACT---TTGTG-TAGAGGGCTTCAAACTCCTC 106719 || ||||| ||| ||||| ||||| | |||||||| || Sbjct 149968 ATTGGAGTGAAACGTTTGTACTCGTTTGACTCACTTGTGGTAGAGTTCCTCAAACTCATC 150027 Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779 ||| |||||| ||| || || || | || || ||||| |||| ||||| || Sbjct 150028 ACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTCCATTCGCCGTT 150087 Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 106838 ||| | || ||||||||||| | ||| || ||||| || | | || | || | | | Sbjct 150088 CTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAACAAGTCGCGAGC 150147 Query 106839 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 106898 || || ||||||| | ||| || || | || |||||||| | | | || |||| Sbjct 150148 ACGGA-CCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAAACGTCGGCGT 150206 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 106955 |||||||||| ||||||| |||| | ||| || | |||| | |||| || | Sbjct 150207 GCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACGT 150266 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | || || ||| ||| | ||||| ||||| || || | ||||| || |||||| | Sbjct 150267 ATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTGG 150326 Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075 | || | |||| || | | || | | | ||| | | || |||||||| |||| Sbjct 150327 TTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCAATACCGCCAG 150386 Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135 | ||| || || ||||| | | || || |||||||||| | || || | Sbjct 150387 CAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTATCAT 150446 Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195 ||||| || |||| ||||||||| |||||| || ||| || || || || ||||||| Sbjct 150447 CCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCCTGCGTTGAAGA 150506 Query 107196 GGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACA 107254 |||| || | || || |||| || | | ||||| | || |||||||| | | Sbjct 150507 GGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTGACATGTAGTTATATGTCTCGATCGCG 150565 Query 107255 GAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 || ||||||||||| ||||| ||||| | || |||||||||| ||||| ||| || Sbjct 150566 GACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGTGTTGAGG 150621 >seq244 Length=165466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 294/444 (66%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||||||||| || | ||| ||||| |||||| Sbjct 56018 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATA 56077 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 |||||||| ||||| | ||||| | || || | || | | ||| ||||| Sbjct 56078 AAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTG-TTGCCGAGGGCTAAGAGCAGACG 56136 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||||||||||| | |||| | ||||| |||| || || Sbjct 56137 GTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCGCA 56196 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||| | | || | | |||| | | |||||| || ||||| | | |||| | || Sbjct 56197 TGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCTTG 56256 Query 117225 GATAGTTTCGGTAG--TGGG-TCTA-TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | || | | | | |||| | | || | | || ||| || |||||| | Sbjct 56257 CACAGCCT-GCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAG--GCA-GGCAAAGT 56312 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | |||||| || || || || || ||||| |||||| || |||||||||| Sbjct 56313 CAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGA 56372 Query 117341 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 | || |||||||| | ||| | || | ||| || | ||| ||||||||||||||| Sbjct 56373 GGCCACGCTTCTTGAGCCAGAAGATGGATGCA-AAGGCACCGCTGAAGAAGATACCCTCA 56431 Query 117400 ACACACGCAAACGCAAAAAGGCGC 117423 || ||||| || | ||| ||| Sbjct 56432 ACGGCGGCAAAGGCGATAAGACGC 56455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977665727000