Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq164 212 7e-50
seq244 91.5 2e-13
>seq164
Length=316633
Score = 212 bits (234), Expect = 7e-50
Identities = 915/1436 (64%), Gaps = 68/1436 (5%)
Strand=Plus/Plus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|| ||||| | || || || |||||||| || || || || | || || | ||||||
Sbjct 149194 TAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGAA 149253
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTT---CCTTGATG-CG 106050
|| |||||||| || || | | || ||| || | ||| | | | || || |
Sbjct 149254 GCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGCC 149313
Query 106051 TTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAAT 106108
||| ||| ||||||||| | | | || | || | || |||| |||| || ||
Sbjct 149314 TTCAATGA----ATCCCAGTCCCAAAGATCAG-TAGGGGTGACGTTCC-ACATGTCGTAT 149367
Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168
|| | | ||||||||| ||||||||| || | || |||| | ||| | | | |
Sbjct 149368 TGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACCAAGCTCCTTA 149427
Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228
| | || ||| || |||| || || || |||||||||||||| ||| ||
Sbjct 149428 GAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGATCTGAGTGTTG 149487
Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288
| || | | || || |||||||| | |||| || ||| |||| ||||||
Sbjct 149488 AGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGCATCAGCGAGA 149547
Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 106348
||||| ||||| | || ||||||| ||| | | ||| || || || |||
Sbjct 149548 CCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGCGTGCCTCTTCGACG 149607
Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408
|| || |||| || |||| | |||||| || || | | || |||| ||
Sbjct 149608 GGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTGAGTGACCTCG 149667
Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468
|| || || | ||||| | || | | | | ||| | || || || |
Sbjct 149668 TGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGAAAGCGGGTAGAGCAAGA 149727
Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528
|| |||| ||||| || || |||||| | | |||||||| | || || || ||
Sbjct 149728 GAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAATGATCTCAGTGCAG 149787
Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588
| ||| ||||| || || ||||| ||||| ||||| ||||| |||||| ||||||
Sbjct 149788 AGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCATGCATCC 149847
Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647
||||||||||| || || | || ||||| ||||| |||| || ||||| | ||||| |
Sbjct 149848 TTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGATTGCATACCACAGC 149907
Query 106648 ATCGGCGG-----CTGGTACA-----ATGGCGTTGGCCC--------------GTCCCTC 106683
|| | | ||| | || | ||| || | | ||| ||
Sbjct 149908 TTCTGGGCACGAACTGTTTCACGCCCACGGCCTTCACGCTCGTATCTGGGAATGTCAGTC 149967
Query 106684 ------------CGC-----CTCGT---ACT---TTGTG-TAGAGGGCTTCAAACTCCTC 106719
|| ||||| ||| ||||| ||||| | |||||||| ||
Sbjct 149968 ATTGGAGTGAAACGTTTGTACTCGTTTGACTCACTTGTGGTAGAGTTCCTCAAACTCATC 150027
Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779
||| |||||| ||| || || || | || || ||||| |||| ||||| ||
Sbjct 150028 ACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTCCATTCGCCGTT 150087
Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 106838
||| | || ||||||||||| | ||| || ||||| || | | || | || | | |
Sbjct 150088 CTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAACAAGTCGCGAGC 150147
Query 106839 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 106898
|| || ||||||| | ||| || || | || |||||||| | | | || ||||
Sbjct 150148 ACGGA-CCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAAACGTCGGCGT 150206
Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 106955
|||||||||| ||||||| |||| | ||| || | |||| | |||| || |
Sbjct 150207 GCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACGT 150266
Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015
| || || ||| ||| | ||||| ||||| || || | ||||| || |||||| |
Sbjct 150267 ATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTGG 150326
Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075
| || | |||| || | | || | | | ||| | | || |||||||| ||||
Sbjct 150327 TTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCAATACCGCCAG 150386
Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135
| ||| || || ||||| | | || || |||||||||| | || || |
Sbjct 150387 CAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTATCAT 150446
Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195
||||| || |||| ||||||||| |||||| || ||| || || || || |||||||
Sbjct 150447 CCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCCTGCGTTGAAGA 150506
Query 107196 GGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACA 107254
|||| || | || || |||| || | | ||||| | || |||||||| | |
Sbjct 150507 GGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTGACATGTAGTTATATGTCTCGATCGCG 150565
Query 107255 GAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310
|| ||||||||||| ||||| ||||| | || |||||||||| ||||| ||| ||
Sbjct 150566 GACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGTGTTGAGG 150621
>seq244
Length=165466
Score = 91.5 bits (100), Expect = 2e-13
Identities = 294/444 (66%), Gaps = 12/444 (3%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| ||||| |||||||| |||||||||||||| || | ||| ||||| ||||||
Sbjct 56018 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATA 56077
Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA-AATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104
|||||||| ||||| | ||||| | || || | || | | ||| |||||
Sbjct 56078 AAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTG-TTGCCGAGGGCTAAGAGCAGACG 56136
Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164
|| | ||| |||||||||||| | |||| | ||||| |||| || ||
Sbjct 56137 GTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCGCA 56196
Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224
||| | | || | | |||| | | |||||| || ||||| | | |||| | ||
Sbjct 56197 TGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCTTG 56256
Query 117225 GATAGTTTCGGTAG--TGGG-TCTA-TTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280
| || | | | | |||| | | || | | || ||| || |||||| |
Sbjct 56257 CACAGCCT-GCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAG--GCA-GGCAAAGT 56312
Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340
| ||| | |||||| || || || || || ||||| |||||| || ||||||||||
Sbjct 56313 CAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGA 56372
Query 117341 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399
| || |||||||| | ||| | || | ||| || | ||| |||||||||||||||
Sbjct 56373 GGCCACGCTTCTTGAGCCAGAAGATGGATGCA-AAGGCACCGCTGAAGAAGATACCCTCA 56431
Query 117400 ACACACGCAAACGCAAAAAGGCGC 117423
|| ||||| || | ||| |||
Sbjct 56432 ACGGCGGCAAAGGCGATAAGACGC 56455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589977665727000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |