Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq9 147 5e-30
seq151 104 5e-17
>seq9
Length=355999
Score = 147 bits (162), Expect = 5e-30
Identities = 147/188 (78%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
||||| ||||| ||||| || || || || ||||| |||| |||| || | ||||| ||
Sbjct 45194 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCATCCTC 45252
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| |||||||| | ||| |||||||||||||||||||| || ||||| ||
Sbjct 45253 CAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTG 45312
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||||||| ||| || || || ||||| || || ||| ||||| ||||| | |||||
Sbjct 45313 AATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTT 45372
Query 195111 TCCTGTCA 195118
|| ||||
Sbjct 45373 GCCGGTCA 45380
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || |||||||| || || || || ||||| |||| || || | || ||||||
Sbjct 45477 ACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCG 45536
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||||||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct 45537 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 45596
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| || || || |||||||| || || ||||| | ||| | ||||||
Sbjct 45597 ATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTT 45656
Query 195112 CCTGT 195116
|| ||
Sbjct 45657 CCCGT 45661
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || || || || || || ||||| |||| || |||| ||||| || |||||
Sbjct 44743 GTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTG 44802
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| ||||| || || || |||||||| || || || || || || ||||| || ||
Sbjct 44803 CTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTT 44862
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||||| || |||||||| ||| || || || || || | ||||| || ||
Sbjct 44863 CGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGT 44922
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| ||| || ||||| | |||||
Sbjct 44923 CAGAGTCTTAACGAAAATCTGCAT 44946
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| ||||| ||||| || ||||| || | ||||||| ||||| ||||||||
Sbjct 44971 GTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCGAGCTG 45030
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | || || || || || || || || |||||||| ||||| ||
Sbjct 45031 CTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTGAATCTT 45090
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || ||||| || ||||| ||||| || || ||||| || | ||||| || ||
Sbjct 45091 TGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 45150
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | ||||||
Sbjct 45151 GAGTGTCTTGACGAAGATTTGCAT 45174
>seq151
Length=370960
Score = 104 bits (114), Expect = 5e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||| ||||| ||||| || ||||| |||| || || | || || ||||||||
Sbjct 220896 GTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTG 220955
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || ||||| || || |||||||| || |||||||| || ||
Sbjct 220956 CTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTT 221015
Query 195057 TTGCTTGACGTTCTC 195071
|||||| || ||
Sbjct 221016 GGACTTGACATTGTC 221030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109475558525975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |