Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 147 5e-30 seq151 104 5e-17 >seq9 Length=355999 Score = 147 bits (162), Expect = 5e-30 Identities = 147/188 (78%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 ||||| ||||| ||||| || || || || ||||| |||| |||| || | ||||| || Sbjct 45194 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCATCCTC 45252 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| |||||||| | ||| |||||||||||||||||||| || ||||| || Sbjct 45253 CAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTG 45312 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| ||| || || || ||||| || || ||| ||||| ||||| | ||||| Sbjct 45313 AATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTT 45372 Query 195111 TCCTGTCA 195118 || |||| Sbjct 45373 GCCGGTCA 45380 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| || || || || ||||| |||| || || | || |||||| Sbjct 45477 ACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCG 45536 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| | || ||||||||||| |||||||| || ||||| || Sbjct 45537 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 45596 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || |||||||| || || ||||| | ||| | |||||| Sbjct 45597 ATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTT 45656 Query 195112 CCTGT 195116 || || Sbjct 45657 CCCGT 45661 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || || || || ||||| |||| || |||| ||||| || ||||| Sbjct 44743 GTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAAGCTG 44802 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || || |||||||| || || || || || || ||||| || || Sbjct 44803 CTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGATCTT 44862 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| || |||||||| ||| || || || || || | ||||| || || Sbjct 44863 CGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCCAGT 44922 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | ||||| Sbjct 44923 CAGAGTCTTAACGAAAATCTGCAT 44946 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || ||||| || | ||||||| ||||| |||||||| Sbjct 44971 GTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCGAGCTG 45030 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | || || || || || || || || |||||||| ||||| || Sbjct 45031 CTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTGAATCTT 45090 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||| || ||||| ||||| || || ||||| || | ||||| || || Sbjct 45091 TGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 45150 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 45151 GAGTGTCTTGACGAAGATTTGCAT 45174 >seq151 Length=370960 Score = 104 bits (114), Expect = 5e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || ||||| |||| || || | || || |||||||| Sbjct 220896 GTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTG 220955 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || ||||| || || |||||||| || |||||||| || || Sbjct 220956 CTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTT 221015 Query 195057 TTGCTTGACGTTCTC 195071 |||||| || || Sbjct 221016 GGACTTGACATTGTC 221030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475558525975