Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 3e-13 >seq9 Length=355999 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/216 (69%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || || || ||||| ||||| || || |||| |||| || Sbjct 44966 ACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCG 45025 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | || ||||| || |||| | ||||| ||||| | Sbjct 45026 AGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTGA 45085 Query 34893 ATCTTCTGTTTGACG-----GATGCTAT-CGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||| ||| |||| ||| |||| | ||| || || | || ||| Sbjct 45086 ATCTTTGATTTTACGTTGTCGATGGTATCCGAT------GACTCGACCTCAAGAGTGATG 45139 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||| || ||||| |||||| Sbjct 45140 GTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCATA 45175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631918499400