Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq164 145 9e-30 >seq164 Length=316633 Score = 145 bits (160), Expect = 9e-30 Identities = 438/672 (65%), Gaps = 6/672 (1%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| ||||| ||||| || | | | |||||| ||| || || || | || | Sbjct 150016 CTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGT 150075 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || | | | || || | |||| || | || || ||||| || || || Sbjct 150076 CCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAA 150135 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 || || | || | | ||||| || ||| ||| | | || ||||| ||| | | Sbjct 150136 CAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAA 150195 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || |||||||| || | ||| || || | |||| || || ||||| || || Sbjct 150196 AACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACC 150255 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | |||| ||||| ||||| || || | | ||| |||| | |||||| || Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTAATTGAAATA 48482 ||||||||||||| |||||| ||| |||| | ||| | | ||| | | Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATT--CAGA 150373 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || ||||| || || | || || || | ||||| || ||||| ||||| || ||| Sbjct 150374 CCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCT 150433 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC-AAGT 48601 || || |||||||| | || | | || || ||| |||||||| || |||| || Sbjct 150434 TCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGG-TGACGGGGT 150492 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATA 48661 |||| || || | || || || ||||| | || |||| | ||| | | ||||| Sbjct 150493 GCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAGTTATA 150552 Query 48662 TGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACAT 48721 ||| || || | || || || || || || |||| || ||||||||| | ||| Sbjct 150553 TGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCAT 150612 Query 48722 ATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 | |||||| | |||| ||| ||| ||| ||| | | || |||||| ||| | || Sbjct 150613 GTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGT 150672 Query 48782 TTTAAAACCAAA 48793 || ||||| || Sbjct 150673 CTTGAAACCGAA 150684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105813797000