Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq196 89.7 4e-13 >seq196 Length=468221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 29746 CTCCT-GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAG 29804 ||||| |||||| | ||| || || || | | || || | |||| || | ||||| Sbjct 28508 CTCCTTGTTTATACGCAGGGTAGGGAAATCTTTAGGTTCGCGGTCGATTTGGATTTTCAG 28567 Query 29805 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 29864 | || ||||| || ||||||||||| ||||| |||| |||||| || ||||| Sbjct 28568 GGCGTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCCATTGTGTGGGTGAAGGTCCCCGG 28627 Query 29865 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924 || || |||||| || | ||||| || || | || |||| ||||||||| || Sbjct 28628 CGTAAGATCGCAGACGTGGGCGAGCATGTGGGTTAGTAAAGCGTAGGAGGCGATGTTGAA 28687 Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963 ||| | ||||| |||||||| | || | |||||||| Sbjct 28688 GGGGATGCCGAGGCCCATGTCGCAGGAGCGTTGGTAGAG 28726 Score = 89.7 bits (98), Expect = 4e-13 Identities = 229/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105 |||||||| || | | ||||||||||| ||| | || |||| | | ||| | Sbjct 28869 GGGTTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGATT 28928 Query 30106 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG-TACT 30163 | || || || || || || || ||||| ||| ||||| || || ||| | || | Sbjct 28929 AC-TTCGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTGCG-TCGTGGCCGCGGTATT 28986 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 | || |||||||| | ||| ||||| || || || ||||| | ||| || ||||| || Sbjct 28987 CGGCGCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGT 29046 Query 30224 GCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30282 | || |||| | |||| | ||| | ||| |||||| ||||||||||||| | Sbjct 29047 GTGAGA-GCCCTACGCTGTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTTGATT 29105 Query 30283 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30342 || || |||||| ||| ||| |||||| ||| || ||||| ||||| || | Sbjct 29106 CCGGCGTCTGAGAGCGGTTTTGAGGTTGTGGTGCCTGCGATAAACCAGAGCAGTTCGCCG 29165 Query 30343 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | ||||| || || | |||||| || |||||||| Sbjct 29166 ATTACGGCGCGGAGGAACACACGCTTGGTTGTTAGGAGGGG 29206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615483488525