Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq196 89.7 4e-13
>seq196
Length=468221
Score = 89.7 bits (98), Expect = 4e-13
Identities = 152/219 (69%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 29746 CTCCT-GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAG 29804
||||| |||||| | ||| || || || | | || || | |||| || | |||||
Sbjct 28508 CTCCTTGTTTATACGCAGGGTAGGGAAATCTTTAGGTTCGCGGTCGATTTGGATTTTCAG 28567
Query 29805 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 29864
| || ||||| || ||||||||||| ||||| |||| |||||| || |||||
Sbjct 28568 GGCGTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCCATTGTGTGGGTGAAGGTCCCCGG 28627
Query 29865 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924
|| || |||||| || | ||||| || || | || |||| ||||||||| ||
Sbjct 28628 CGTAAGATCGCAGACGTGGGCGAGCATGTGGGTTAGTAAAGCGTAGGAGGCGATGTTGAA 28687
Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963
||| | ||||| |||||||| | || | ||||||||
Sbjct 28688 GGGGATGCCGAGGCCCATGTCGCAGGAGCGTTGGTAGAG 28726
Score = 89.7 bits (98), Expect = 4e-13
Identities = 229/341 (67%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30105
|||||||| || | | ||||||||||| ||| | || |||| | | ||| |
Sbjct 28869 GGGTTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGATT 28928
Query 30106 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG-TACT 30163
| || || || || || || || ||||| ||| ||||| || || ||| | || |
Sbjct 28929 AC-TTCGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTGCG-TCGTGGCCGCGGTATT 28986
Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223
| || |||||||| | ||| ||||| || || || ||||| | ||| || ||||| ||
Sbjct 28987 CGGCGCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGT 29046
Query 30224 GCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30282
| || |||| | |||| | ||| | ||| |||||| ||||||||||||| |
Sbjct 29047 GTGAGA-GCCCTACGCTGTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTTGATT 29105
Query 30283 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30342
|| || |||||| ||| ||| |||||| ||| || ||||| ||||| || |
Sbjct 29106 CCGGCGTCTGAGAGCGGTTTTGAGGTTGTGGTGCCTGCGATAAACCAGAGCAGTTCGCCG 29165
Query 30343 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
| ||||| || || | |||||| || ||||||||
Sbjct 29166 ATTACGGCGCGGAGGAACACACGCTTGGTTGTTAGGAGGGG 29206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408615483488525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |